Data from: Separating biological signal from methodological noise in home range estimates
Data files
Jul 11, 2025 version files 255.04 KB
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Data_code_Methodological_noise.zip
249.73 KB
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README.md
5.32 KB
Abstract
Space use is commonly estimated in animal ecology. It has become a cornerstone of evidence-based conservation planning, with animal tracking increasingly used to underpin the designation of protected areas with high conservation value. However, tracking technologies and analytical methods may introduce biases in home range size estimates. We assessed these potential biases using simulated tracking data and published home range size estimates from empirical studies of animal tracking. We first simulated animal movement data and added published location error estimates for different technologies used for tracking sea turtles. Location data were analysed using common space use estimation methods (Minimum Convex Polygon, fixed and Autocorrelated Kernel Density Estimation, Biased Random Bridge, and dynamic Brownian Bridge Movement Model). Second, we reviewed home range size estimates obtained using different technologies to track hawksbill (Eretmochelys imbricata) and green (Chelonia mydas) turtles to assess the relative impacts on home range estimates due to (i) tracking accuracy and (ii) analytical methods. For both simulated data and empirical values of space use from the literature (n = 90 studies), relatively large home range estimates tended to be generated from lower-resolution Argos tracking compared to higher-resolution Fastloc-GPS tracking. These findings reflect inaccuracies in location data, providing spuriously large movements. For example, Argos and Fastloc-GPS home range size estimates for adult green turtles averaged 393 km2 and 53 km2, respectively (n = 64 and 39 individuals). For simulated data, biases introduced by tracking accuracy had a far greater impact on home range size estimation than the analytical method used, apart from when using Autocorrelated Kernel Density Estimation (AKDE), which compensated for positional error very well. Our results suggest that in many cases, hawksbill and green turtles have relatively small home ranges (< 10 km2 and in some cases, < 1 km2), with this picture of their limited space use only emerging through high-accuracy tracking. These general conclusions likely apply broadly across taxa and will impact attempts to assess patterns of home range sizes recorded for individuals across studies in different regions.
Dataset DOI: 10.5061/dryad.31zcrjf0b
Description of the data and file structure
This repository contains the data and code used in Kale et al. (2025) to investigate methodological approaches for analysing animal movement data. The files include simulated animal movement data used in the study and home range size data extracted from published literature.
Study overview
We simulated animal movement data based on the Ornstein-Uhlenbeck Foraging (OUF) Gaussian process using the ‘simulate()’ function from package ctmm in R version 4.2.3. Data were generated for 10 distinct individuals to ensure computational feasibility while obtaining reasonable estimates of variability. To create mock tracking datasets from these simulated data, we added randomly generated, independent location errors for each location fix, drawn from bivariate (x and y) normal distributions typical of Fastloc-GPS and Argos high- and low-accuracy data.
We calculated the 50% and 95% utilisation distribution (UD) for each mock tracking dataset using five analytical methods: 1) Minimum Convex Polygon (MCP), 2) fixed Kernel Density Estimation (KDE), 3) Autocorrelated Kernel Density Estimation (AKDE), 4) Biased Random Bridge (BRB), and 5) dynamic Brownian Bridge Movement Model (dBBMM).
Additionally, we searched for peer-reviewed literature on foraging home ranges of hawksbill (Eretemochelys imbricata) and green (Chelonia mydas) turtles using the Web of Science and Google Scholar. We examined available studies for information on methods and metrics of home range sizes.
Files and variables
File: Data_code_Methodological_noise.zip
Description: The ZIP folder contains two data files (.csv) and one code file (.R) described below.
Data_Simulated_animal_locations.csv: This file contains location data generated for 10 simulated animals using ‘simulate()’ function in R package ctmm.
Number of variables: 4
Number of header rows: 1
Number of rows: 14410
Variable list:
id: (character) simulated animal identifier
date: (numeric) time and date stamps in the ‘dd/mm/yy hh:mm:ss’ format
lon: (numeric) longitude
lat: (numeric) latitude
Data type: character, numeric
Note: Location data in this file was fully simulated and does not contain any real animal location data. As the data are simulated, there is no risk to any species listed as endangered on the IUCN Red List.
Data_lit-review_Methodological noise.csv: This file contains information on foraging home ranges of hawksbill and green turtles extracted from published studies.
Number of variables: 23
Number of header rows: 1
Number of rows: 130
Variable list:
author: (character) Authors of the published study
country: (character) Country where the study was conducted
study.location: (character) Study location
ocean: (character) Oceanic region
foraging.ground: (character) Hawksbill/green turtle foraging ground identified by the published study
year: (numeric) Years when the study was conducted
season: (character) Season, if home range sizes were estimated for different seasons
day.night: (character) Diel period, if home range sizes were estimated based on time of day
method: (character) Tracking method (including acoustic, Argos, Fastloc-GPS, radio and citizen-based observations)
method2: (character) Secondary equipment used (including depth sounders and tags, time-depth recorders and radio transmitters)
analysis: (character) Primary analytical method namely MCP, KDE, Localised Convex Hull (LoCoH), AKDE, BRB, and dBBMM.
analysis2: (character) Secondary analytical method or parameters used for primary analytical method
loc.class: (character) Combination of Argos location classes used to filter locations
sample.size: (numeric) Number of individuals that were tracked (n)
species: (character) Sea turtle species tracked, either hawksbill or green turtles
sex: (character) Sex of sampled sea turtles (f: female, m: male, u: unknown)
dev.stage: (character) Life stage of sampled sea turtles
ud95: (numeric) Mean home range size estimate as 95% UD (sq.km.), also called full home range size
sd.95: (numeric) Standard deviation of 95% UD (sq.km.)
ud50: (numeric) Mean home range size estimate as 50% UD (sq.km.), also called core area
sd.50: (numeric) Standard deviation of 50% UD (sq.km.)
mcp100: (numeric) Mean home range size estimate as 100% MCP (sq.km.)
sd.mcp100: (numeric) Standard deviation of 100% MCP (sq.km.)
Note: NAs indicate where data were not applicable or missing.
Data type: character, numeric
Rcode_Methodological Noise: This code includes steps to generate simulated animal location data, Argos and Fastloc-GPS mock tracking datasets, and estimate home range sizes using five analytical methods for the mock tracking datasets.
Code/software
All analyses were conducted in R version 4.2.3. The code includes steps to generate simulated animal location data, create mock tracking datasets from the simulated movement data, and estimate space use (as home ranges) using five analytical methods. Required R packages: 1) ctmm, 2) lubridate, 3) adehabitatHR, 4) move, 5) sf, 6) tidyverse, and 7) tictoc.