Data from: Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the ‘anaerobic’ termite gut spirochete Treponema primitia
Data files
Nov 19, 2013 version files 14.08 MB
-
2-hydroxymuconic semialdehyde hydrolase ARB output.nex
14.89 KB
-
2-hydroxymuconic semialdehyde hydrolase Mr Bayes output.nex.con.tre
20.75 KB
-
2-hydroxymuconic semialdehyde hydrolase original MUSCLE alignment.txt
99.27 KB
-
2-oxopent-4-enoate hydratase ARB output.nex
12.52 KB
-
2-oxopent-4-enoate hydratase Mr Bayes output.nex.con.tre
23.41 KB
-
2-oxopent-4-enoate hydratase original MUSCLE alignment.txt
1.01 MB
-
4-hydroxy-2-oxopentanoate aldolase ARB output.nex
16.67 KB
-
4-hydroxy-2-oxopentanoate aldolase DmpG-like domain ARB output.nex
4.18 KB
-
4-hydroxy-2-oxopentanoate aldolase DmpG-like domain Mr Bayes output.nex.con.tre
17.75 KB
-
4-hydroxy-2-oxopentanoate aldolase DmpG-like domain original MUSCLE alignment.txt
774.91 KB
-
4-hydroxy-2-oxopentanoate aldolase HMGL-like domain ARB output.nex
9.44 KB
-
4-hydroxy-2-oxopentanoate aldolase HMGL-like domain Mr Bayes output.nex.con.tre
17.70 KB
-
4-hydroxy-2-oxopentanoate aldolase HMGL-like domain original MUSCLE alignment.txt
1.61 MB
-
4-hydroxy-2-oxopentanoate aldolase Mr Bayes output.nex.con.tre
19.76 KB
-
4-hydroxy-2-oxopentanoate aldolase original MUSCLE alignment.txt
2.31 MB
-
acetaldehyde dehydrogenase ARB output.nex
13.45 KB
-
acetaldehyde dehydrogenase dimerisation domain ARB output.nex
6.92 KB
-
acetaldehyde dehydrogenase dimerisation domain Mr Bayes output.nex.con.tre
19.39 KB
-
acetaldehyde dehydrogenase dimerisation domain original MUSCLE alignment.txt
1.20 MB
-
acetaldehyde dehydrogenase Mr Bayes output.nex.con.tre
23.75 KB
-
acetaldehyde dehydrogenase NAD binding domain ARB output.nex
6.12 KB
-
acetaldehyde dehydrogenase NAD binding domain Mr Bayes output.nex.con.tre
19.71 KB
-
acetaldehyde dehydrogenase NAD binding domain original MUSCLE alignment.txt
943.58 KB
-
acetaldehyde dehydrogenase original MUSCLE alignment.txt
1.36 MB
-
catechol 2,3-dioxygenase ARB output.nex
13.74 KB
-
catechol 2,3-dioxygenase C-terminal domain ARB output.nex
8.05 KB
-
catechol 2,3-dioxygenase C-terminal domain Mr Bayes output.nex.con.tre
24.49 KB
-
catechol 2,3-dioxygenase C-terminal domain original MUSCLE alignment.txt
291.90 KB
-
catechol 2,3-dioxygenase C-terminal domain with extra-domain region ARB output.nex
9.25 KB
-
catechol 2,3-dioxygenase C-terminal domain with extra-domain region Mr Bayes output.nex.con.tre
20.40 KB
-
catechol 2,3-dioxygenase C-terminal domain with extra-domain region original MUSCLE alignment.txt
20.13 KB
-
catechol 2,3-dioxygenase C-terminal domain with intra-domain region ARB output.nex
8.86 KB
-
catechol 2,3-dioxygenase C-terminal domain with intra-domain region original MUSCLE alignment.txt
20.13 KB
-
catechol 2,3-dioxygenase C-terminal domain with intra-domain region.nex.con.tre
24.14 KB
-
catechol 2,3-dioxygenase Mr Bayes output.nex.con.tre
18.53 KB
-
catechol 2,3-dioxygenase N-terminal domain ARB output.nex
5.62 KB
-
catechol 2,3-dioxygenase N-terminal domain Mr Bayes output.nex.con.tre
27.19 KB
-
catechol 2,3-dioxygenase N-terminal domain original MUSCLE alignment.txt
174.12 KB
-
catechol 2,3-dioxygenase N-terminal domain with extra-domain region ARB output.nex
5.88 KB
-
catechol 2,3-dioxygenase N-terminal domain with extra-domain region Mr Bayes output.nex.con.tre
24.55 KB
-
catechol 2,3-dioxygenase N-terminal domain with extra-domain region original MUSCLE alignment.txt
20.53 KB
-
catechol 2,3-dioxygenase N-terminal domain with intra-domain region ARB output.nex
6.96 KB
-
catechol 2,3-dioxygenase N-terminal domain with intra-domain region Mr Bayes output.nex.con.tre
27.16 KB
-
catechol 2,3-dioxygenase N-terminal domain with intra-domain region original MUSCLE alignment.txt
20.53 KB
-
catechol 2,3-dioxygenase original MUSCLE alignment.txt
3.23 MB
-
Depth of O2 penetration in Treponema primitia O2:aromatic gradient cultures.xlsx
43.92 KB
-
ferredoxin-like peptide ARB output.nex
4.35 KB
-
ferredoxin-like peptide Mr Bayes output.nex.con.tre
15.35 KB
-
ferredoxin-like peptide original MUSCLE alignment.txt
403.10 KB
-
Raw growth (OD) data.xlsx
49.83 KB
Abstract
Microorganisms have evolved a spectacular diversity of metabolisms, some of which allow them to overcome environmental constraints, utilize abundant but inaccessible resources and drive nutrient cycling in various ecosystems. The termite hindgut microbial community is optimized to metabolize wood, and in recent years, the in situ physiological and ecological functions of community members have been researched. Spirochetes are abundant in the termite gut, and herein, putative aromatic meta-cleavage pathway genes typical of aerobic pseudomonads were located in genomes of homoacetogenic termite hindgut ‘anaerobes’, Treponema primitia str. ZAS-1 and ZAS-2. Phylogenetic analyses suggest the T. primitia catechol 2,3-dioxygenase and several other essential meta-pathway genes were acquired from an α-proteobacterium in the distant past to augment several genes T. primitia acquired from anaerobic firmicutes that do not directly catabolize aromatics but can contribute to the final pathway steps. Further, transcripts for each meta-pathway gene were expressed in strictly anaerobic cultures of T. primitia str. ZAS-2 indicative of constitutive pathway expression. Also, the addition of catechol + O2 to T. primitia liquid cultures resulted in the transient accumulation of trace amounts of the yellow ring cleavage product, hydroxymuconic semialdehyde. This is the first evidence of aromatic ring cleavage in the phylum (division) Spirochetes. Results also support a possible role for T. primitia in termite hindgut O2/lignin aromatic monomer metabolism. Potential O2-dependent yet nonrespiratory microbial metabolisms have heretofore been overlooked and warrant further investigation. These metabolisms could describe the degradation of plant-derived and other aromatics in microoxic environments and contribute significantly to carbon turnover.