Data from: Incorporating single-step strategy into random regression model to enhance genomic prediction of longitudinal trait
Data files
Aug 18, 2016 version files 2.67 GB
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default-geno-1-7.zip
218.26 MB
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default-geno-15-20.zip
187.35 MB
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default-geno-8-14.zip
217.92 MB
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default-ped-phe-tbv.zip
58.62 MB
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generation.zip
1.26 MB
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h2-0.1.zip
180.37 MB
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h2-0.5.zip
180.12 MB
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large-refpop-geno-1-10.zip
194.27 MB
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large-refpop-geno-11-20.zip
194.36 MB
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non-random-sel-geno-1-7.zip
213.52 MB
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non-random-sel-geno-15-20.zip
182.62 MB
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non-random-sel-geno-8-14.zip
213.48 MB
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non-random-sel-ped-phe-tbv.zip
59.15 MB
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QTL10.zip
174.73 MB
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QTL500.zip
176.08 MB
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README_for_default-geno-1-7.txt
2.32 KB
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README_for_default-geno-15-20.txt
2.32 KB
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README_for_default-geno-8-14.txt
2.32 KB
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README_for_default-ped-phe-tbv.txt
2.32 KB
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README_for_generation.txt
2.32 KB
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README_for_h2-0.1.txt
2.32 KB
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README_for_h2-0.5.txt
2.32 KB
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README_for_large-refpop-geno-1-10.txt
2.32 KB
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README_for_large-refpop-geno-11-20.txt
2.32 KB
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README_for_non-random-sel-geno-1-7.txt
2.32 KB
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README_for_non-random-sel-geno-15-20.txt
2.32 KB
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README_for_non-random-sel-geno-8-14.txt
2.32 KB
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README_for_non-random-sel-ped-phe-tbv.txt
2.32 KB
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README_for_QTL10.txt
2.32 KB
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README_for_QTL500.txt
2.32 KB
Abstract
In prediction of genomic values, single-step method has been demonstrated to outperform multi-step methods. In statistical analyses of longitudinal traits, random regression test-day model (RR-TDM) has clear advantages over other models. Our goal in this study was to evaluate the performance of the model integrating both single-step and RR-TDM prediction methods, called single-step random regression test-day model (SS RR-TDM), in comparison with the pedigree-based RR-TDM and genomic best linear unbiased prediction (GBLUP) model. We performed extensive simulations to exploit potential advantages of SS RR-TDM over the other two models under various scenarios with different level of heritability, the number of QTL as well as the selection scheme. SS RR-TDM was found to achieve the highest accuracy and unbiasedness under all scenarios, exhibiting robust prediction ability in longitudinal trait analyses. Moreover, SS RR-TDM showed better persistency of accuracy over generations than GBLUP model. In addition, we also found that the SS RR-TDM had advantages over RR-TDM and GBLUP in terms of a real dataset of human contributed by the GAW18 workshop. The findings in our study firstly proved the feasibility and advantages of the SS RR-TDM, and further enhanced strategies for the genomic prediction of longitudinal traits in the future.