Data from: Dynamic effects of thermal acclimation on chytridiomycosis infection intensity and transmission potential in Xenopus laevis
Data files
Jul 30, 2024 version files 110.68 KB
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Experiment1_2CombinedBdInfectionData.csv
85.11 KB
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Experiment1_2CombinedMassData.csv
13.36 KB
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Experiment1_2TemperatureData.csv
3.77 KB
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README.md
8.44 KB
Jul 30, 2024 version files 110.68 KB
-
Experiment1_2CombinedBdInfectionData.csv
85.11 KB
-
Experiment1_2CombinedMassData.csv
13.36 KB
-
Experiment1_2TemperatureData.csv
3.77 KB
-
README.md
8.44 KB
Abstract
The pandemic amphibian pathogen Batrachochytrium dendrobatidis (Bd) can cause more severe infections with variable temperatures due to delays in host thermal acclimation following temperature shifts. However, little is known about the timing of these acclimation effects or their consequences for Bd transmission. We measured how thermal acclimation affects Bd infection in Xenopus laevis, using a timing-of-exposure treatment to investigate acclimation effect persistence following a temperature shift. Consistent with a delay in host acclimation, warm-acclimated frogs exposed to Bd immediately following a temperature decrease (Day 0) developed higher infection intensities than frogs already acclimated to the cool temperature. This acclimation effect was surprisingly persistent (5 weeks). Acclimation did not affect infection intensity when Bd exposure occurred one week after the temperature shift, indicating that frogs fully acclimated to new temperatures within 7 days. This suggests that acclimation effect persistence beyond one week post-exposure was caused by carry-over from initially high infection loads, rather than an extended delay in host acclimation. In a second experiment, we replicated the persistent thermal acclimation effects on Bd infection but found no acclimation effects on zoospore production. This suggests that variable temperatures consistently exacerbate individual Bd infection but may not necessarily increase Bd transmission.
This study investigates the effects of acclimation and performance temperatures on Xenopus laevis Bd infections from skin swabs and filters measuring zoospore production.
TITLE: Dynamic effects of thermal acclimation on chytridiomycosis infection intensity and transmission potential in Xenopus laevis
James E. Noelker (Corresponding author: jaynoelker@gmail.com)
Vitoria Abreu Ruozzi
Kyle D. Spengler
Hunter M. Craig
Thomas R. Raffel (Principle investigator)
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File 1: Experiment1&2TemperatureData.csv
CSV of temperature data from Experiment 1 & 2 comparing target temperatures with data collected using HOBO temperature loggers in each incubator.
Variable name | Description |
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Experiment | unique identifier for each experiment as either 2021.IndInf for Experiment 1 and 2022.IndInf for Experiment 2 |
IncNum | each incubator’s identification number |
Block | spatial block for each incubator form Experiment 1 or Experiment 2 |
Treatment | assigned target temperature treatment for each incubator in Celcius |
AvgTempC | average measured temperature for each incubator in Celcius |
SDTempC | standard deviation for each incubator in Celcius |
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File 2: Experiment1&2CombinedBdInfectionData.csv
CSV of Bd infection data collected from skin swabs for Experiments 1 & 2 collected weekly and filters for Experiment 2 collected on day 7 and 35. Each row is a data collection day for each frog as well as the conditions the frog was experiencing. Our data includes cells with values of “NA” (not applicable) meaning no data was collected for that variable. However, the cells are kept in the file which is essential for accurate analysis of the dataset using our R script.
Variable name | Description |
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Experiment | unique identifier for each experiment as either 2021.IndInf for Experiment 1 and 2022.IndInf for Experiment 2 |
Year | year the experiment was conducted |
SampleID | unique identifier for each swab sample taken from a frog on a particular day (FrogID_Date) |
FrogID | unique frog identification number for each experiment |
Block | spatial block for within each experiment |
Exp.Block | spatial block for each experiment (Year.Block) |
Date | actual date a swab or filter sample was collected |
Day | day of the experiment relative to the temperature shift |
DayOfExpo | each frog’s day of exposure to Bd zoospores relative to the temperature shift |
TimeSinceExposure | number of days since exposure for a frog for a swab or filter sample |
AccTemp | a frog’s assigned acclimation temperature |
PerfTemp | a frog’s assigned performance temperature |
AccInc | a frog’s assigned acclimation incubator |
PerfInc | a frog’s assigned performance incubator |
LnSwabBd | log(Bd zoospore equivelents) after qPCR assay from frog swabs |
LnFilterBd | log(Bd zoospore equivelents) after qPCR assay from frog filters |
TotalTime.min | the total length of time in minutes that a frog was “soaked” in clean water during the zoospore production experiment |
TotalVolume.mL | the total volume of water in mL filtered after a frog “soaked” |
BdStatus | A frog’s infection status as either infected (1) or uninfectied (0) |
Notes | any notes collected about a given sample |
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File 3: Experiment1&2CombinedMassData.csv
CSV of mass data for all frogs for Experiments 1 & 2.
Variable name | Description |
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Experiment | year the experiment was conducted |
FrogCode | unique identifier for each frog (FrogID_Block) |
InitialMass | mass of each frog in grams for both experiments at the beginning of each experiment |
DayOfInfectionMass | mass of each frog in grams for both experiments on the day they were exposed to Bd |
DeathMass | mass of each frog in grams for both experiments on the day they died |
DeathDate | date that each frog died |
CauseOfDeath | the cause of death for each frog in both experiments as either EndOfExperiment.Euthanized if a frog was euthanized at the end of the experiment or EndPoint.Euthanized if a frog was euthanized during the experiment due to sever Bd infection |
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