Data from: Microbial transfer through fecal strings on eggs affect leaf beetle microbiome dynamics
Data files
Apr 15, 2025 version files 5.29 MB
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ASV_table.csv
3.44 MB
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metadata.csv
6.90 KB
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README.md
1.71 KB
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sequence_table.xlsx
1.23 MB
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taxa_table.csv
614.58 KB
Abstract
Gut microbiomes of holometabolous insects can be strongly affected by the metamorphosis. Previous studies suggest that microbiome colonization and community development often rely on specialized transmission routes between host life stages, but there is a lack of comparative studies of microbial community dynamics due to different transmission mechanisms. We compared the gut microbial community dynamics across life stages for five Galerucella species that differ in a potential microbial transfer mechanism by sequencing amplicons of the 16S rRNA gene. Females of three of the studied species place fecal strings on top of the egg, which may improve the transfer of gut microbes, unlike females of the two other species. We found the α-diversity was more stable between life stages in fecal string placer-species compared with the non-fecal string placer-species. Moreover, there were consistent differences in the microbiome between species, where we identified multiple taxa in each species that consistently appeared in all life stages. Therefore, fecal strings placed on eggs seem to play an important role in the diversity and dynamic of gut bacteria in Galerucella species, and the vertical transfer of gut bacteria between host insect generations. Alternative, but less efficient, transmission routes seem to occur in non-fecal string placer-species.
Data for microbial communities in five Galerucella leaf beetles, across 5 life stages (eggs, newly hatched larvae, three-week old larvae, pupae and newly hatched adults), based on sequencing of the V3-V4 hypervariable 128 regions (480 bp) of the 16S rRNA gene.
Host beetle species include G. lineola (Fabricius, 1781), G. pusilla (Duftschmid, 1825), G. calmariensis (L., 1767), G. nymphaea (L., 1758) and G. sagittariae (Gyllenhal, 1813). They differ in one key trait. Females of G. lineola, G. pusilla and G. calmariensis deposit a fecal string on the egg whereas G. nymphaea and G. sagittariae do not.
Description of the data and file structure
The data includes four files:
ASV table – This file contains the number of reads for each ASV (column A, N=9661) across all included Sample ID #201-386 (N=172, Column B-FQ). ASV’s from mitochondria and chloroplasts are excluded. Identities of ASV can be found in Taxa table.xls, and Sample ID’s are found in Metadata.xls
Metadata – Sample descriptions (Sample ID, Beetle species, Life stages, Whether females deposit a fecal string). Life stages include eggs, newly hatched larvae, three week old larvae, pupae and adult beetles.
Taxa table – ASV identities (ASV#, Domain, Phylum, Class, Order, Family, Genus, Species, N=9661) based on the annotated SILVA 147 138 SSU 16S rRNA reference database (www.arb-silva.de). ASV’s from mitochondria and chloroplasts are excluded. NA = not available.
Sequence table – Representative sequences for all ASVs (ASV ID #1-9986), including those from mitochondria and chloroplasts.