Nitrogen and phosphorus enrichment differentially affect grassland ecosystem functioning via multi-trophic pathways
Data files
Jul 02, 2025 version files 197.88 KB
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NP_Data.xlsx
94.25 KB
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R_code.txt
97.25 KB
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README.md
6.38 KB
Abstract
The enrichment of nutrients (e.g., N and P) is crucial in shaping the links between diversity and ecosystem functions. Previous research has mainly focused on how nutrient enrichment affects community diversity and composition within a single trophic level, such as plants or soil microbial communities. However, how nutrient enrichment affects community composition and diversity across multiple trophic levels and ecosystem functions has not been extensively explored. By conducting two long-term N- and P-enrichment experiments in temperate steppes, we explored the response of diversity and composition at both the community and functional group level across the soil food webs to nutrient enrichment, as well as their relationship with ecosystem functions. We found that the responses of soil biota and plants to nutrient enrichment varied depending on the community and functional group. N-enrichment resulted in a decrease in plant and bacterial richness at both the community and functional group levels, while P-enrichment decreased fungal and nematode richness at both levels. In addition, N-enrichment changed the community composition of plants and all soil biota, while P-enrichment only affected the community composition of fungi and nematodes. Our findings also showed that community composition across multiple trophic levels played a crucial role in regulating ecosystem functions (e.g., plant biomass, soil biota biomass, and soil organic matter (SOM) decomposition) when considering both community composition and diversity simultaneously. For example, N-enrichment induced changes in the community composition of plants, bacteria, and nematodes, which altered plant biomass, while P-enrichment induced changes in the community composition of nematodes that altered soil biota biomass and SOM decomposition. Overall, our study suggests that long-term nutrient enrichment may have a greater impact on community composition than diversity across multiple trophic levels, and these changes in community composition can have broad implications for ecosystem functions. Therefore, more effort should be made not only on community diversity but also on composition to clarify the relationship between diversity and ecosystem functions in future studies under climate change.
The dataset consists of an NP_Data.xlsx and an R code file (R_code.txt). Sheet 1 was the dataset for all raw data. The dataset contains 113 variables for Sheet 1. NA in the dataset indicates missing data for the relevant variable.
Column name – Units, Description
SampleID – Unique ID for each sample
Treat – unitless Different treatments
Block – Unique ID for each block
Lev – unitless Level of nutrient enrichment
ZLev1 – unitless Level of nutrient enrichment
ZLev – unitless Level of nutrient enrichment
PH – Soil pH
SM – % Soil moisture
TIN – mg kg-1 Total inorganic nitrogen
SOC – g kg-1 Soil organic carbon
TSN – g kg-1 Total soil nitrogen
TSP – g kg-1 Total soil phosphorus
CTN – ratio of SOC and TSN
CTP – ratio of SOC and TSP
NTP – ratio of TSN and TSP
Plant_Rich – Plant richness
AB_Rich – Annuals and biennials richness
PB_Rich – Perennial bunchgrass richness
PF_Rich – Perennial forbs richness
PR_Rich – Perennial rhizome grasses richness
Ba_Rich – Bacterial richness
BC_Rich – C-cycle bacteria richness
BN_Rich – N-cycle bacteria richness
Fu_Rich – Fungal richness
ECM_Rich – Mycorrhizal fungi richness
Path_Rich – Plant pathogen fungi richness
Sap_Rich – Soil saprotrophic fungi composition
Nema_Rich – Soil nematode richness
BF_Rich – Bacteria-feeders nematode richness
FF_Rich – Fungal-feeders nematode richness
HF_Rich – Plant-feeders nematode richness
OC_Rich – Omnivores+carnivores nematode richness
Plant_PCo1 – Plant composition, first axis of the PCoA
Plant_PCo2 – Plant composition, second axis of the PCoA
AB_PCo1 – Annuals and biennials composition, first axis of the PCoA
AB_PCo2 – Annuals and biennials composition, second axis of the PCoA
PB_PCo1 – Perennial bunchgrass composition, first axis of the PCoA
PB_PCo2 – Perennial bunchgrass composition, second axis of the PCoA
PF_PCo1 – Perennial forbs composition, first axis of the PCoA
PF_PCo2 – Perennial forbs composition, second axis of the PCoA
PR_PCo1 – Perennial rhizome grasses composition, first axis of the PCoA
PR_PCo2 – Perennial rhizome grasses composition, second axis of the PCoA
Ba_PCo1 – Bacterial composition, first axis of the PCoA
Ba_PCo2 – Bacterial composition, second axis of the PCoA
BC_PCo1 – C-cycle bacteria composition, first axis of the PCoA
BC_PCo2 – C-cycle bacteria composition, second axis of the PCoA
BN_PCo1 – N-cycle bacteria composition, first axis of the PCoA
BN_PCo2 – N-cycle bacteria composition, second axis of the PCoA
Fu_PCo1 – Fungal composition, first axis of the PCoA
Fu_PCo2 – Fungal composition, second axis of the PCoA
ECM_PCo1 – Mycorrhizal fungi composition, first axis of the PCoA
ECM_PCo2 – Mycorrhizal fungi composition, second axis of the PCoA
Path_PCo1 – Plant pathogen fungi composition, first axis of the PCoA
Path_PCo2 – Plant pathogen fungi composition, second axis of the PCoA
Sap_PCo1 – Soil saprotroph fungi composition, first axis of the PCoA
Sap_PCo2 – Soil saprotroph fungi composition, second axis of the PCoA
Nema_PCo1 – Nematode taxon composition, first axis of the PCoA
Nema_PCo2 – Nematode taxon composition, second axis of the PCoA
BF_PCo1 – Bacterial feeders composition, first axis of the PCoA
BF_PCo2 – Bacterial feeders composition, second axis of the PCoA
FF_PCo1 – Fungal feeders composition, first axis of the PCoA
FF_PCo2 – Fungal feeders composition, second axis of the PCoA
HF_PCo1 – Plant feeders composition, first axis of the PCoA
HF_PCo2 – Plant feeders composition, second axis of the PCoA
OC_PCo1 – Omnivores+carnivores composition, first axis of the PCoA
OC_PCo2 – Omnivores+carnivores composition, second axis of the PCoA
ZPlant_Rich – Standardized plant richness
ZPlant_PCoA1 – Standardized plant composition
ZAB_Rich – Standardized annuals and biennials richness
ZAB_PCoA1 – Standardized annuals and biennials composition
ZPB_Rich – Standardized perennial bunchgrass richness
ZPB_PCoA1 – Standardized perennial bunchgrass composition
ZPF_Rich – Standardized perennial forbs richness
ZPF_PCoA1 – Standardized perennial forbs composition
ZPR_Rich – Standardized perennial rhizome grasses richness
ZPR_PCoA1 – Standardized perennial rhizome grasses composition
ZBa_Rich – Standardized bacterial richness
ZBa_PCoA1 – Standardized bacterial composition
ZBC_Rich – Standardized C-cycle bacteria richness
ZBC_PCoA1 – Standardized C-cycle bacteria composition
ZBN_Rich – Standardized N-cycle bacteria richness
ZBN_PCoA1 – Standardized N-cycle bacteria composition
ZFu_Rich – Standardized fungal richness
ZFu_PCoA1 – Standardized fungal composition
ZECM_Rich – Standardized mycorrhizal fungi richness
ZECM_PCoA1 – Standardized mycorrhizal fungi composition
ZPath_Rich – Standardized plant pathogen fungi richness
ZPath_PCoA1 – Standardized plant pathogen fungi composition
ZSap_Rich – Standardized soil saprotroph fungi richness
ZSap_PCoA1 – Standardized soil saprotroph fungi composition
ZNema_Rich – Standardized soil nematode richness
ZNema_PCoA1 – Standardized nematode taxon composition
ZBF_Rich – Standardized bacteria-feeders nematode richness
ZBF_PCoA1 – Standardized bacterial feeders composition
ZFF_Rich – Standardized fungal-feeders nematode richness
ZFF_PCoA1 – Standardized fungal feeders composition
ZHF_Rich – Standardized plant-feeders nematode richness
ZHF_PCoA1 – Standardized plant feeders composition
ZOC_Rich – Standardized omnivores+carnivores nematode richness
ZOC_PCoA1 – Standardized omnivores+carnivores composition
AFun – the functions of plant biomass
BFun – the functions of soil biota biomass
SFun – the functions of SOM decomposition
Litter – Soil decomposition
ANPP – g m-1 Aboveground net primary production
BB – g m-1 Belowground biomass
Cmin – mg kg-1 day-1 Soil C mineralization rate
Nmin – mg kg-1 day-1 Soil N mineralization rate
TMB – nmol g-1 Total microbial biomass
TNA – ind g-1 Soil nematode abundance
ZAFun – Standardized the functions of plant biomass
ZBFun – Standardized the functions of soil biota biomass
ZSFun – Standardized the functions of SOM decomposition
Code/Software
The file R_code includes all the code required for the manuscript.
Any scripts, code,or packages can be run using R version 4.0.5 (R Core Team, 2021).