Data from: Contrasting demographic processes underlie uphill shifts in a desert ecosystem
Data files
Oct 21, 2024 version files 1.07 MB
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individ_plant_outcomes.csv
1.07 MB
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README.md
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Abstract
Climate change is projected to cause extensive plant range shifts, and in many cases such shifts already are underway. Most long-term studies of range shifts measure emergent changes in species distributions but not the underlying demographic patterns that shape them. To better understand species’ elevational range shifts and their underlying demographic processes, we use the powerful approach of rephotography, comparing historical (1978-82) and modern (2015-16) photographs taken along a 1000 m elevational gradient in theColorado Desert of Southern California. This approach allowed us to track demographic outcomes for 4263 individual plants of 11 long-lived, perennial species over the past ~36 years. All species showed an upward shift in mean elevation (average = 45 m), consistent with observed increasing temperature and severe drought in the region. We found that varying demographic processes underlaid these elevational shifts, with some species showing higher recruitment and some showing higher survival with increasing elevation. Species with faster life history rates (higher background recruitment and mortality rates) underwent larger elevational shifts. Our findings emphasize the importance of demography and life history in shaping range shift responses and future community composition, as well as the sensitivity of desert systems to climate change despite the typical ‘slow motion’ population dynamics of perennial desert plants.
https://doi.org/10.5061/dryad.pk0p2ngz6
Description of the data and file structure
Files and variables
File: individ_plant_outcomes.csv
Description: Data on demographic outcomes for individual plants extracted from paired historical-modern photos taken along the Deep Canyon Transect in Riverside County, California.
Variables
- site: site name. Map of sites can be found in the Supplementary Materials of Skikne et al. 2024. Contrasting demographic processes underlie uphill shifts in a desert ecosystem. Ecology.
- spp: species
- extant_t1: whether the plant existed in the historical photo (1) or not (0)
- alive_t1: whether the plant was alive in the historical photo (1) or not (0)
- height_t1: height of the plant in the historical photo (unitless, see below)
- width_t1: width of the plant in the historical photo (unitless, see below)
- extant_t2: whether the plant existed in the modern photo (1) or not (0)
- alive_t2: whether the plant was alive in the modern photo (1) or not (0)
- height_t2: height of the plant in the modern photo (unitless, see below)
- width_t2: width of the plant in the modern photo (unitless, see below)
- outcome: whether the plant recruited, survived, or died between the two periods
- d.height: relative change in height between the two periods, calculated as (height_t2 – height_t1) / height_t1
- d.width: relative change in width between the two periods, calculated as (width_t2 – width_t1) / width_t1
- area: area of the site (km2)
- slope: mean slope of the site (degrees)
- elev: mean elevation of the site (m)
- insol: mean insolation of the site (Wh/m2)
- asp: mean cosine(aspect) of the site, where aspect is in radians. This creates values ranging from -1 (South) to 1 (North).
- date_t1: date of historical photo
- date_t2: date of modern photo
- trackable_site: whether this site was “trackable” or “count-only” for this species. See Methods of Skikne et al. 2024. Contrasting demographic processes underlie uphill shifts in a desert ecosystem. Ecology.
Notes:
- NA indicates that we did not collect the data, which could happen for a variety of potential reasons, including plants that were blocked from view in one time period, or cases where we could not tell if a plant was alive or dead.
- Height and widths were measured using the ArcGIS ruler tool and unitless for our purposes.
We utilized photos originally taken by Dr. Wilbur Mayhew between 1977 and 1982 (Mayhew 1981), which we digitized from 35 mm slides stored at Philip L. Boyd Deep Canyon Desert Research Center (doi:10.21973/N3V66D). We relocated permanently marked sites where historical photos had been taken and rephotographed them using a Canon 5D Mark II camera and tripod in 2015 and 2016. We took one additional set of photos in April 2017 after the end of a multi-year drought, so that we could distinguish dormant from dead individuals of two drought-deciduous species (brittlebush, Encelia farinosa and white bursage, Ambrosia dumosa). We approximated the original view of the original photos as closely as possible in modern photos. For each photo view, we chose a single historical and modern photo for analysis based on resolution, contrast and coloration. The mean timespan between paired historical and modern photos was 36 years. We perfected the alignment between the paired historical and modern photos in Photoshop by making one photo semi-transparent, then rotating and resizing it while maintaining original aspect ratios.
Data extraction
We extracted data on 11 perennial species that appeared in 5+ sites. We extracted data from the photos in ArcGIS, arranging the paired photos as map layers. We created polygons to delimit a survey area close enough to the camera to identify species; these polygons serve as the “sites” in our subsequent analysis. In some cases, we collected data on larger-bodied or particularly conspicuous species, such as ocotillo (Fouquieria splendens) and creosote (Larrea tridentata), in a larger area including locations farther from the camera than for smaller, less conspicuous species. We recorded whether each plant underwent recruitment (absent historical, alive modern), mortality (alive historical, dead modern) or survival (alive both). We excluded plants that were dead in the historical period or with main stems outside the site polygon. In some cases we consulted other historical and modern photos of the same site to determine species identity or assess whether an individual was alive. We counted and measured clusters of agave (Agave deserti) and Mojave yucca (Yucca schidigera) as single individuals. Rarely, we may have misidentified pygmy cedar (Peucephyllum schottii) for creosote where these species co-occur on steep slopes, since they have similar morphology and are difficult to distinguish from a distance.
We measured individual relative change in plant size by measuring the height (perpendicular to the ground) and width (the largest horizontal extent of the plant perpendicular to the camera, i.e. canopy width) of surviving plants in both time periods, using the ruler tool in ArcGIS and focusing on woody biomass. When dead agave rosettes were surrounded by live rosettes, we did not include the width that was dead if it was >20% the total width. We calculated the relative change in height of each plant as (H1–H0) / H0, where H indicates plant height and the subscripts 0 and 1 indicate the historical and modern period, respectively. We used an equivalent equation for relative change in width.
For some species at some sites, we could not track the fate of individuals between the two time periods. This most often occurred for narrow-bodied and relatively short-lived species (e.g. teddy bear cholla, Cylindropuntia bigelovii) in photo pairs that were difficult to perfectly align, thereby making it difficult to tell whether plants either survived, or died and were replaced by recruits. It also occurred when a large plant died and a new plant “appeared” in a spot that was previously hidden, such that we were unable to determine whether the second plant was a recruit or a surviving plant. We therefore designated two site types for each species: “trackable” sites – those where we could track the fate of at least one third of individuals of a given species over time, and “count-only” sites – those where we could track fewer than one third of individuals, and instead only counted individuals. Count-only sites were retained for analyses of mean elevation shifts but not demographic rates.
Geophysical data
We used Google Earth Pro “ground level view” to draw polygons matching the extent of the site polygons outlined in the photos. To do so, we first “stood” at the camera’s locality and angle, then used corresponding features (e.g. washes, large creosote, hills) to find the exact site, and finally dropped pins to mark polygon vertices. We used these polygons to extract data on each site’s size, as well as its mean elevation, aspect, slope and annual solar radiation (“insolation”) using USGS NED Contiguous US 1/3 arc-second digital elevation model (2013) in ArcGIS. We took the cosine of aspect to create linear values ranging from -1 (South) to 1 (North).
Additional details
Additional details on how these data were collected and processed can be found in the Methods and Supplementary Materials of Skikne et al. 2024. Contrasting demographic processes underlie uphill shifts in a desert ecosystem.