Because a population’s ability to respond to rapid change is dictated by standing genetic variation, we can better predict a population’s long-term viability by estimating and then comparing adult census size (N) and effective population size (N_e). However, most studies only measure N or N_e, which can be misleading. Using a combination of field and genomic sequence data, we here estimate and compare N and N_e in two range-restricted endemics of the Solomon Islands. Two Zosterops White-eye species inhabit the small island of Kolombangara, with a high elevation species endemic to the island (Z. murphyi) and a low elevation species endemic to the Solomon Islands (Z. kulambangrae). Field observations reveal large values of N for both species with Z. kulambangrae numbering at 114,781 ± 32,233 adults, and Z. murphyi numbering at 64,412 ± 15,324 adults. In contrast, genomic analyses reveal that N_e was much lower than N, with Z. kulambangrae estimated at 694.5 and Z. murphyi at 796.1 individuals. Further, positive Tajima’s D values for both species suggest that they have experienced a demographic contraction, providing a mechanism for low values of N_e. Comparison of N and N_e suggests that Z. kulambangrae and Z. murphyi are not at immediate threat of extinction but may be at genetic risk. Our results provide important baseline data for long-term monitoring of these island endemics, and argue for measuring both population size estimates to better gauge long-term population viability.

Five files are uploaded:

1) Field data (Bird ID, transect, sex, GPS point of capture): Cowles_etal_Zosterops_Dryad

2) Point count data for Z. kulambangrae: Z_kulambangrae_5-26-20.csv

3) Point count data for Z. murphyi: Z_murphyi_5-26-20.csv

4) Processed genomics file containing 1508 SNPs used to measure N_e: filt_miss75_final_recode

5) ReadMe file containing author information, data collection information, and descriptions of the datasets