Data from: Assessing short- and long-term anthropogenic threats to a reintroduced fish in a restored urban riverscape
Data files
Jul 28, 2025 version files 348.55 KB
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capture_mark_recapture.csv
20.61 KB
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habitat_association_fish.csv
101.12 KB
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habitat_association_transects.csv
221.36 KB
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README.md
5.45 KB
Abstract
Understanding which species can persist in human-modified environments is essential to biodiversity conservation in the Anthropocene. In urbanized environments, many stressors limit the persistence of imperiled native species via impacts on the abiotic and biotic environment. Habitat restoration followed by reintroduction of native species may be an effective strategy to maintain or even regenerate biodiversity in urbanized environments, but few studies have assessed these two conservation strategies concomitantly in urban freshwater ecosystems. We assessed short-term population dynamics and habitat associations of an endemic species of conservation concern, Guadalupe bass (Micropterus treculii, ‘GB’), that was reintroduced in a restored urbanized riverscape already occupied by a generalist congener, largemouth bass (M. salmoides, ‘LMB’). We performed four seasonal surveys of habitat association and one capture-mark-recapture survey of the two species at eight sites distributed along a 17 km reach of the San Antonio River within San Antonio, Texas—the seventh largest city in the United States. Detection of multiple size classes at all eight sites indicated that reintroduced GB have dispersed throughout this riverscape and are naturally recruiting. Juvenile GB were associated with restored riffles and transitioned to pools as adults—an ontogenetic habitat shift documented in rivers draining natural landscapes elsewhere in the GB native range. By contrast, juvenile and adult LMB were associated with pool habitats. Our results indicated that the construction of riffle habitats along this restored riverscape provide essential habitat for juvenile GB that was unavailable prior to restoration. Habitat overlap of adult bass indicated the potential for competition between the two species; however, GB body condition did not vary with LMB abundance across sites or seasons. Next, we assessed long-term stressors by comparing dispersal barriers, hydrologic alteration, pollution proxies, and fish kill frequencies in the urbanized restored riverscape to minimally-impacted riverscapes throughout the native GB range. The urbanized restored riverscape was subject to more barriers, flashier hydrology, and more pollution; however, these stressors did not translate to more frequently-documented fish kills in our study. We showed that restoration of instream habitat followed by reintroduction of native species enhanced urbanized biodiversity. Monitoring population responses to multiple urbanized stressors and mitigating those that threaten the long-term persistence of reintroduced species remains important.
https://doi.org/10.5061/dryad.q83bk3jqz
Description of the data and file structure
Three data tables are provided in .csv format:
- capture_mark_recapture (.csv file): Input for Schnabel and Schumacher-Eschmeyer population size analysis.
- habitat_association_fish (.csv file): Input for outlying mean index (OMI) analysis.
- habitat_association_transects (.csv file): Input for outlying mean index (OMI) analysis.
Files and variables
File: capture_mark_recapture.csv
Description:
Variables
- site_no: Site numbers listed from 1 (most upstream) to 8 (most downstream).
- date: Date of fish capture.
- day: Day on which the individual was captured (can be day 1, day 2, or day 3).
- genspe: Abbreviation for the Latin name of the individual captured (Micropterus salmoides or M. treculii).
- TL_mm: Total length of captured individual measured in millimeters.
- recap: Boolean variable indicating whether the captured individual was a recapture (i.e., had been captured and marked on a previous day).
- marked_day1: Boolean variable indicating whether the recaptured individual was also captured on day 1.
- marked_day2: Boolean variable indicating whether the recaptured individual was also captured on day 2.
File: habitat_association_fish.csv
Description:
Variables
- season: Season during which measurement was taken (summer 2021, fall 2021, winter 2022, or spring 2022).
- site_no: Site numbers listed from 1 (most upstream) to 8 (most downstream).
- date: Date of habitat measurement.
- lat: Latitude of habitat measurement in decimal degrees.
- lon: Longitude of habitat measurement in decimal degrees.
- species: Abbreviation for the Latin name of the individual captured (Micropterus salmoides or M. treculii).
- TL_mm: Total length of captured individual measured in millimeters.
- mass_g: Mass of captured individual measured in grams.
- dep_cm: Water depth at survey point measured in centimeters.
- vel_mps: Flow velocity at survey point measured in meters per second.
- emb_pct: Substrate embeddedness at survey point measured as percent coverage (0% = unembedded, 100% fully embedded).
- can_pct: Canopy cover (streamside vegetation or human infrastructure) at survey point measured in percent cover (0% = open, 100% = covered).
- substrate: Substrate size class at survey point following modified Wentworth scale.
- undercut: Boolean variable indicating presence of undercut bank at survey point.
- bank_veg: Boolean variable indicating presence of bank vegetation overhanging the water surface at survey point.
- macrophyte: Boolean variable indicating presence of macrophytes at survey point.
- algae: Boolean variable indicating presence of algae at survey point.
- detritus: Boolean variable indicating presence of detritus at survey point.
- wood: Boolean variable indicating presence of woody debris at survey point.
- boulder: Boolean variable indicating presence of boulders at survey point.
- Missing data: NA
File: habitat_association_transects.csv
Description:
Variables
- season: Season during which measurement was taken (summer 2021, fall 2021, winter 2022, or spring 2022).
- site_no: Site numbers listed from 1 (most upstream) to 8 (most downstream).
- date: Date of habitat measurement.
- transect_no: Transect numbers within a site listed from 1 (most downstream) to 16 (most upstream).
- point_no: Point numbers within a transect listed from 1 (east bank) to 11 (west bank).
- dep_cm: Water depth at survey point measured in centimeters.
- vel_mps: Flow velocity at survey point measured in meters per second.
- emb_pct: Substrate embeddedness at survey point measured as percent coverage (0% = unembedded, 100% fully embedded).
- can_pct: Canopy cover (streamside vegetation or human infrastructure) at survey point measured in percent cover (0% = open, 100% = covered).
- substrate: Substrate size class at survey point following modified Wentworth scale.
- undercut: Boolean variable indicating presence of undercut bank at survey point.
- bank_veg: Boolean variable indicating presence of bank vegetation overhanging the water surface at survey point.
- macrophyte: Boolean variable indicating presence of macrophytes at survey point.
- algae: Boolean variable indicating presence of algae at survey point.
- detritus: Boolean variable indicating presence of detritus at survey point.
- wood: Boolean variable indicating presence of woody debris at survey point.
- boulder: Boolean variable indicating presence of boulders at survey point.
Access information
Other publicly accessible locations of the data:
- Global Biodiversity Information Facility (www.gbif.org).
- StreamCat Dataset (https://www.epa.gov/national-aquatic-resource-surveys/streamcat-dataset).
- USGS National Water Information System: 15-minute water temperature data from 66 study sites (https://waterdata.usgs.gov/nwis).
- Texas Parks and Wildlife Department Kills and Spills Database (https://tpwd.texas.gov/landwater/water/environconcerns/kills_and_spills/).