Data from: Correlation of morphology and metabolism of reproductive traits in the genus Phrynocephalus around the Qinghai-Tibetan Plateau
Data files
Aug 14, 2025 version files 104.33 KB
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11species.tre
13.32 KB
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phrydata_Phenfixrevised.csv
68.73 KB
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phrydatarevised.txt
1.55 KB
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phylpca.R
1.41 KB
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R_code_revised2025.R
17.26 KB
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README.md
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Abstract
The offspring size-number trade-off is a crucial concept in life-history theory, offering key insights into animal reproductive strategies. Our study examines the relationship between reproductive characteristics, morphological traits, and metabolism in Phrynocephalus lizards across 10 species around the Qinghai-Tibetan Plateau. Reproductive output and morphological and metabolic differentiations were analyzed using Phylogenetic Generalized Least Squares (PGLS) and phylogenetic ANOVA. The results show no significant differences in reproductive traits between oviparous and viviparous species. Snout-vent length and standard metabolic rate positively correlated with offspring mass, while no correlation was found with offspring number. The lack of a trade-off between offspring size and number suggests that larger females invest more in offspring mass than in offspring number. These were inconsistent with the classic prediction that females give priority to adjusting the number rather than the size of their offspring, enabling us to understand the evolution of the reproductive strategy in reptiles.
https://doi.org/10.5061/dryad.q83bk3jtd
Description of the data and file structure
Files and variables
File: 11species.tre
Description: The phylogeny of the 11 species of lizards obtained from Maximum Likelihood analysis based on mtDNA cyt b gene. Numbers on each node of the tree are the posterior probability (above the branch) and the divergence time (millions of years ago, ma).
File: phrydatarevised.txt
Description: This data file provides Phrynocephalus species data used for PGLS (Phylogenetic Generalized Least Squares) analysis, including morphology, metabolism, and reproductive traits.
File: phrydata_Phenfixrevised.csv
Description: This data file contains morphological data for all Phrynocephalus species. And head size and limb size data were subjected to phyPCA (Phylogenetic principal components analysis). The separate principal components were extracted to represent head size and limb size.
The morphological variables include snout-vent length (SVL,mm), head length (HL,mm), abdomen length (AL,mm), head width (HW,mm), snout length (SL,mm), snout width (SW,mm), fore-limb length (FLL,mm), hind-limb length (HLL,mm), tail length(TL, cm). HL, HW, SL, SW, FLL and HLL refer to the length of protruding parts of the body.
The abbreviations RAL, RHL,RHW means relative AL (abdomen length), relative HL (head length) and relative HW (head width). These relative indices, along with others the same format, are calculated by dividing the original trait (AL, HL, HW, etc.) by SVL (Snout-Vent Length).
Code/software
File: R_code_revised2025.R
This code implements PGLS and phyANOVA to analyze correlation of morphology and metabolism of reproductive traits.
File: phylpca.R
This code contains the phyPCA used for conducting on the morphological traits related to head size and limb size.
Data collection
The morphological variables include snout-vent length (SVL), head length (HL), abdomen length (AL), head width (HW), snout length (SL), snout width (SW), fore-limb length (FLL), and hind-limb length (HLL). HL, HW, SL, SW, FLL, and HLL refer to the length of protruding parts of the body. To minimize experimental errors, we used the same caliper with an accuracy of 0.01 mm for measurements and had the same experimenter perform the operations and readings of the data.
Phylogenetic analysis
Based on previous studies and our field work in recent years, we compiled 10 published mtDNA cytochrome b (cyt b) genes (GenBank IDs AY053901, AY053906, AY053915, AY053936, AY053946, AY053967, AY053976, AY053991, KF691627, KF691632). To construct a phylogeny for Phrynocephalus clades, we used MEGA-XI (Tamura et al., 2021) to align selected mtDNA cyt b genes with one gene from the outgroup Paralaudakia lehmanni (GenBank ID KF691618). Phylogenetic trees were constructed separately by using maximum likelihood (ML), implemented in PhyloSuite v1.2.1 (Figure 2; Zhang et al., 2020).
Statistical analysis
All statistical analyses were performed with R 4.3.1 (R Development Core Team, 2023). Phylogenetic generalized least squares (PGLS) regression and phylogenetic analysis of variance (phyANOVA) were conducted using CAPER 1.0.3 (Orme et al., 2023) and geomorph 4.0.7.99(Baken et al., 2021) to analyze the correlations between phenotypic traits, metabolism, and reproductive traits. We standardized all phenotypic data by dividing each trait by snout-vent length (SVL) to remove the influence of individual size. To mitigate collinearity in phenotypic data, PCA was conducted on the morphological traits related to head size and limb size. Separate principal components were extracted to represent head size and limb size. PGLS was conducted to account for the nonindependence of data due to the shared evolutionary history among species. The strength of phylogenetic signal in phenotypic traits was indicated by Pagel’s (1999) lambda (λ). If λ = 0, it suggests no significant correlation with phylogeny; if 0 < λ < 1, it indicates some degree of correlation with phylogeny; if λ = 1, it signifies a strong association with phylogeny.