Florigen and antiflorigen gene expression correlates with reproductive state in a marine angiosperm, Zostera marina
Data files
Jul 04, 2025 version files 39.87 MB
-
FT_population_map.csv
7.54 KB
-
FULLTREE7.0_full.nex
115.11 KB
-
populations.snps.vcf
39.63 MB
-
README.md
2.16 KB
-
WA_Perrenial2022_Data.xlsx
55.17 KB
-
WB-AnnTimeCourse2023_Data.xlsx
59.88 KB
Abstract
Florigen and antiflorigen genes within the phosphatidylethanolamine-binding protein (PEBP) family regulate flowering in angiosperms. In eelgrass (Zostera marina), a marine foundation species threatened by climate change, flowering and seed production are crucial for population resilience. Yet, the molecular mechanism underpinning flowering remains unknown. Using phylogenetic analysis and functional assays in Arabidopsis, we identified thirteen PEBP genes in Z. marina (ZmaPEBP) and showed that four genes altered flowering phenotypes when overexpressed. We used quantitative RT-PCR on Z. marina shoots from perennial and annual populations in Willapa Bay, USA, to assess expression of these four genes in different tissues and expression changes throughout the growth season. We demonstrated that ZmaFT2 and ZmaFT4 promote flowering, and ZmaFT9 and ZmaTFL1a repress flowering in Arabidopsis. Across four genetically-assessed sites with eelgrass, ZmaFT2 and ZmaFT4 were expressed in leaves of both vegetative and reproductive shoots, but only induced in rhizomes of reproductive shoots. ZmaFT9 was distinctively expressed in leaves of vegetative and juvenile shoots, while ZmaTFL1a levels increased after flowering shoots had developed. Our results suggest that ZmaFT2 and ZmaFT4 may promote flowering, while ZmaFT9 may inhibit a floral transition in eelgrass. We speculate that ZmaTFL1a may be involved in flowering shoot architecture.
Dataset DOI: 10.5061/dryad.sbcc2frh0
Description of the data and file structure
This dataset contains the data and code required for analyses in Nolan et al. This dataset includes phylogenetic analyses data for angiosperm PEBP genes, restriction-site associated DNA sequencing (RAD) data, and quantitative RT-PCR data for gene expression analyses of eelgrass samples, collected from Willapa Bay, WA USA.
Files and variables
File: FT_population_map.csv
Variables
- Sample: Sample ID number
- Population: Population source of sample: Bay Center (BC), Long Island (LI), Stackpole (ST) Nahcotta Port
- Area: Life history type (Annual or Perennial)
File: populations.snps.vcf
Description: Raw genotypes for samples used in RADseq after STACKS analysis
File: FULLTREE7.0_full.nex
Description: Full alignment of sequences used in phylogenetic tree analysis (Figure 1). Includes PEBP genes from several angiosperm lineages.
File: WB-AnnTimeCourse2023_Data.xlsx
Description: qPCR data from annual eelgrass shoots collected from Willapa Bay Washington. Data summary on “Readme” sheet within file.
Variables
- Site: Stackpole (ST) and Nahcotta Port (NP)
- Tissue (Leaf or Roots/Rhizomes)
- Date
- deltaCt (calculated from Cq values)
File: WA_Perrenial2022_Data.xlsx
Description: qPCR data from perennial eelgrass shoots collected from Willapa Bay Washington. Data summary on “Readme” sheet within file.
Variables
- Tissue
- Site
- deltaCt (calculated, labeled as “Cq”)
Code
File: 1.FT-Filtering.Rmd
Description: R code for SNP filtering and clone filtering of RADseq samples
File: 1.FT-Filtering.Rmd
Description: R code for population genetics analyses and visualizations for RADseq analyses
Access information
Other publicly accessible locations of the data:
- RAD seq data from annual sites and Stackpole site are from https://doi.org/10.1111/mec.17730