Data from: Endosymbiont load dictates reproductive fate: Experimental validation for the bacterial dosage model in a parthenogenetic weevil (Coleoptera, Curculionidae)
Data files
Feb 02, 2026 version files 80.07 KB
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average_leaf_areas.txt
798 B
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feeding_assay_deaths.txt
996 B
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FernandezGoya.et.al_2025.R
46.06 KB
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parthenogenetic_bacteria_data.txt
2.75 KB
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parthenogenetic_egg_data.txt
6.64 KB
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parthenogenetic_viability_data.txt
3.37 KB
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README.md
4.44 KB
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rick_test.txt
205 B
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sexually_reproducing_data.txt
3.66 KB
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sup.mat_E1wb_viab.txt
1.68 KB
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sup.mat_E1wb.txt
2.24 KB
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sup.mat_E2_wb.txt
1.35 KB
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sup.mat_eggs_viab.txt
4.26 KB
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tissues.txt
1.62 KB
Abstract
The main focus of this work was testing the bacterial dosage model, i.e., that a threshold density of Wolbachia and/or Rickettsia sp. is required for parthenogenetic reproduction. Through tetracycline-curing experiments coupled with bacterial density quantification by real-time PCR, we analysed the quantitative relationship between symbiont density and reproductive outcomes in parthenogenetic Pantomorus postfasciatus females. Additionally, we controlled antibiotic side-effects by analysing i) tissue specific effects; ii) feeding behaviour; and iii) repeating experiments with sexually reproducing populations. We include data on clutch size (amount of eggs laid per female per laying bout) and viability (proportion of hatched eggs per clutch) for sexually reproducing and parthenogenetic females during a 20-day period, relative qPCR quantification as a proxy of Wolbachia and Rickettsia sp. density for whole insects and several tissues, and average area of consumed leaves. Master R script for model fitting (three-parameter log-logistic model (Hill-type) and generalized linear mixed models) is also deposited. This work highlights bacterial density as a key determinant of parthenogenetic reproduction of P. postfasciatus.
Dataset DOI: 10.5061/dryad.tdz08kqc6
Description of the data and file structure
Overview
This repository contains the master R script and associated datasets used to analyse the quantitative relationship between symbiont density and reproductive outcomes in Pantomorus postfasciatus.
The study tests the bacterial dosage model, i.e., that Wolbachia pipientis and Rickettsia sp. must reach a threshold density to induce parthenogenesis.
Data combine antibiotic-curing experiments, qPCR quantification, and reproductive performance measures.
A three-parameter log-logistic model (Hill-type) and generalized linear mixed models are applied to link symbiont load to clutch viability, supported by diagnostic and comparative model analyses.
Files and variables
Input Data and Variable Glossary
Below is a list of all input files used in FernandezGoya.et.al_2025.R, with explanations of content.
- sexually_reproducing_data.txt: Data for sexually reproducing females (control and antibiotic-treated) to analyse average clutch size (amount of eggs laid per female per laying bout) and clutch viability (amount of emerged larvae over eggs laid per female per laying bout).
- parthenogenetic_egg_data.txt: Data for parthenogenetic females (control and antibiotic-treated) to analyse average clutch size.
- parthenogenetic_viability_data.txt: Clutch viability data for parthenogenetic females.
- parthenogenetic_bacteria_data.txt: qPCR-derived bacterial density data for parthenogenetic females.
- average_leaf_areas.txt: Average leaf area consumed per individual, used to assess tetracycline effects on feeding.
- feeding_assay_deaths.txt: Death counts for feeding assay.
- tissues.txt: Tissue-specific qPCR data for Wolbachia and Rickettsia sp.
Supplementary data files
- sup.mat_eggs_viab.txt: Egg number and viability data from supplementary experiments.
- sup.mat_E1wb.txt / sup.mat_E1wb_viab.txt / sup.mat_E2_wb.txt: Wolbachia densities and clutch data from supplementary experiments.
- rick_test.txt: Experimental data testing Rickettsia susceptibility to tetracycline.
Occasionally, Spanish names prevail in input files. Here are the translated names of variables.
| Variable | Meaning | Notes |
|---|---|---|
| ID | Individual code | Unique identifier |
| Tratamiento | Treatment | "Control" or "Tetraciclina" (=Tetracycline) |
| Tiempo | Time (days) | Time since the experiment started |
| Huevos | Eggs laid | Clutch size per female per laying bout |
| Larvas | Larvae hatched | |
| Poblacion | Population | |
| Pfaffl_Wb | Wolbachia relative density | Calculated using Pfaffl Cq method (Pfaffl, 2001) |
| Pfaffl_Ri | Rickettsia sp. relative density | Calculated using Pfaffl Cq method (Pfaffl, 2001) |
| Av_Area | Average leaf area consumed (cm2) | |
| Tejido | Tissue type | C="Head"; D="Digestive"; R="Reproductive"; T="Whole body" |
| Experimento | Experiment | E1; E2 |
Code/software
Analyses were performed using R version 4.4.1 (2024-06-14) under Windows 11 x64.
Key packages include:
drc (drc_3.0-1), lme4, nlme (nlme_3.1-164), lmerTest (lmerTest_3.1-3), DHARMa (DHARMa_0.4.7), MuMIn (MuMIn_1.48.11), ggplot2 (ggplot2_3.5.2), cowplot (cowplot_1.1.3), modelbased (modelbased_0.8.8), emmeans (emmeans_1.11.1), multcomp (multcomp_1.4-28), multcompView (multcompView_0.1-10), car (car_3.1-2), psych (psych_2.4.6.26), dplyr (dplyr_1.1.4), tidyr (tidyr_1.3.1) and dependencies.
