Simulations disentangling temperature vs. VPD effects on tropical forest GPP
Data files
Jul 25, 2024 version files 4.17 GB
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case_directories.tar.gz
14.28 MB
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input_files.tar.gz
102.10 MB
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model_code.tar.gz
816.59 MB
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model_output.tar.gz
3.24 GB
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README.md
4.50 KB
Abstract
Tropical forest photosynthesis can decline at high temperatures due to (1) biochemical responses to increasing temperature and (2) stomatal responses to increasing vapor pressure deficit (VPD), which is associated with increasing temperature. It is challenging to disentangle the influence of these two mechanisms on photosynthesis in observations, because temperature and VPD are tightly correlated in tropical forests. Nonetheless, quantifying the relative strength of these two mechanisms is essential for understanding how tropical gross primary productivity (GPP) will respond to climate change, because increasing atmospheric CO2 concentration may partially offset VPD-driven stomatal responses, but is not expected to mitigate the effects of temperature-driven biochemical responses. We used two terrestrial biosphere models to quantify how physiological process assumptions (temperature acclimation of photosynthesis and dynamic hydraulic stress) and functional traits (e.g. maximum xylem conductivity) influence the relative strength of modeled temperature vs. VPD effects on light-saturated GPP at an Amazonian forest site, a seasonally dry tropical forest site, and an experimental tropical forest mesocosm. By simulating idealized climate change scenarios, we quantified the divergence in GPP predictions under model configurations with stronger VPD effects compared to stronger direct temperature effects. Assumptions consistent with stronger direct temperature effects resulted in larger GPP declines under warming, while assumptions consistent with stronger VPD effects resulted in more resilient GPP under warming. Our findings underscore the importance of quantifying the role of direct temperature and indirect VPD effects for projecting the resilience of tropical forests in the future, and demonstrate that the relative strength of temperature vs. VPD effects in models is highly sensitive to plant functional parameters and structural assumptions about photosynthetic temperature acclimation and plant hydraulics.
This repository contains model code to run Functionally Assembled Terrestrial Ecosystem Simulator (FATES) and Community Land Model version 5 (CLM5) simulations, and it contains model output from these simulations.
Description of the data and file structure
This dataset is organized into several zipped files: model_output
, model_code
, input_files
, and case_directories
.
Model Output
The model_output
file contains multiple directories, each of which contains model output from a different simulation. Simulations are named according to the convention ModelConfiguration_Site_MeteorologicalForcing_Number.
There are eight model configurations:
FATESdef
(default FATES: both photosynethic temperature acclimation and plant hydraulics are off)FATESH
(FATES with photosynethic temperature acclimation off and plant hydraulics on)FATESA
(FATES with photosynethic temperature acclimation on and plant hydraulics off)FATESAH
(FATES with both photosynethic temperature acclimation and plant hydraulics on)CLM5
(default CLM5: both photosynethic temperature acclimation and plant hydraulics are on)CLM5minusH
(CLM5 with photosynethic temperature acclimation on and plant hydraulics off)CLM5minusA
(CLM5 with photosynethic temperature acclimation off and plant hydraulics on)CLM5minusAH
(CLM5 with both photosynethic temperature acclimation and plant hydraulics off)
There are three sites:
K67
(kilometer 67)B2
(Biosphere 2)MXTes
(Tesopaco)
There are multiple meteorological forcings, including the historical meteorology, synthetic meteorologies to isolate different drivers, and idealized climate treatments. These meteorological forcings are described in more detail in the corresponding manuscript in Global Change Biology:
historical
: historical meteorology observed at the site- Synthetic meteorological forcing to isolate different drivers
isolateTBOT
isolateTBOTandVPD
isolateTBOTandVPDandPRECTmms
isolateVPD
decreaseRH
- Idealized climate treatments
increaseTemp
increaseTempdecreaseRH
increaseTempdecreaseRH_highCO2
increaseTemp_highCO2
increaseTempincreaseVPD
increaseVPD
Within each simulation directory, there are three folders: lnd
, logs
, and rest
. lnd
contains model output from the land model and contains two subdirectories: hist
and proc
. hist
contains the raw model output, and proc
contains postprocessed model output such that each file is a time series for a single variable. Each variable is described in the netcdf metadata. rest
contains the restart file for each year of the simulation, which can be used to continue the simulation for additional years. logs
contains the log files from the simulation runs which produced the model output.
Model Code
The model_code
file contains the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) and Community Land Model version 5 (CLM5) model code and the run scripts used to generate individual simulations. There are three subdirectories within this folder: run_scripts
, ctsm_FATES_03Jan2022_derecho
, ctsm_FATES_03Jan2022_acclimOff_derecho
. run_scripts
contains the run scripts used to generate individual simulations, ctsm_FATES_03Jan2022_derecho
contains CLM5 and FATES code used to run the majority of simulations. ctsm_FATES_03Jan2022_acclimOff_derecho
contains a modified version of CLM5 where photosynthetic temperature acclimation was turned off. We thank all scientists and software engineers who contributed to the development of CLM5 and FATES. CLM5 and FATES code is also available on GitHub at https://github.com/ESCOMP/CTSM and https://github.com/NGEET/fates, respectively.
Input Files
The input_files
file contains the custom input files necessary to run the model. There are three subdirectories: B2
, K67
, MXTes
, and param_files.
B2
,K67
, and MXTes
contain site-specific model input files for Biosphere 2, kilometer 67, and Tesopaco, respectively. param_files
contains general parameter files.
Case Directories
The case_directories
folder contains the case directories for each model simulation. These case directories contains information about how each simulation was configured, e.g. namelists and which input files were used.
This dataset contains model output from simulations using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES; Koven et al. 2020) and the Community Land Model version 5 (CLM5; Lawrence et al. 2019).