Species- and trait-based responses of carabids to rotation and closer-to-nature forestry in a temperate forest under changing climate
Data files
May 22, 2025 version files 26.86 KB
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pilis-species-2025.csv
8.14 KB
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README.md
3.38 KB
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Ruzickova-etal-script.R
15.34 KB
Abstract
European temperate forests are managed by various silvicultural practices that can impact ground beetles (Coleoptera: Carabidae) in terms of species composition and abundance. However, the responses at the assemblage or community level may not provide sufficient insight into how individual species react to forest management. We examined the species- and trait-based mid-term (2014–2018) responses of the eight most common carabid species in a managed oak-hornbeam forest in Hungary. The studied forestry treatments included preparation cutting, clear-cutting, green tree retention, gap cutting, and undisturbed control plots. Species responses varied across forestry treatments and years, but clear-cutting consistently had a negative impact on multiple species, particularly on Abax parallelepipedus, Aptinus bombarda, and Carabus hortensis. In contrast, the abundance of Carabus coriaceus and Carabus ullrichii declined after an initial burst in the newly established treatments. Functional traits also influenced the responses; forest specialists and spring and autumn breeders were negatively affected by clear-cutting and retention, followed by an overall decline in their abundance. Notwithstanding, habitat generalists and species without a defined breeding season exhibited more stable abundance trends over the years. These declines may be linked to phenological shifts driven by climate change. Spring breeders may have extended their activity period, leading to increased competition with autumn breeders in late summer and autumn when tenerals of spring breeders emerge. Although our study presents mid-term trends, we believe that it provides a further understanding of the responses of carabid species in managed temperate forests.
https://doi.org/10.5061/dryad.wdbrv15zv
Description of the data and file structure
This dataset contains species- and trait-specific changes in the abundance of ground beetles (Coleoptera: Carabidae) collected in a Hungarian oak-hornbeam forest managed under different forestry treatments. These treatments represented two different silvicultural systems: the rotation forestry system characterized by preparation cuttings, clear-cuttings, and green tree retentions, while small-scale gaps represented the most widely used treatment from the closer-to-nature forestry. Additionally, there were undisturbed control plots without any treatment. The study design followed a complete block design, employing six blocks as replicates.
Carabid data collection followed the Before-After Control-Impact (BACI) concept. Initially, we sampled all plots before the implementation of forestry treatments in 2014, using these pre-treatment data as a baseline. Subsequently, we conducted data collection over the following four years, from 2015 to 2018, resulting in a 5-year-long dataset. In this study, we selected the eight most dominant species to ensure data robustness and model estimates. For each species, we collected traits related to their life history and ecology. In particular, we categorized them according to their habitat affinity (forest-habitat specialists, and generalist species), overwintering stage (adult, larva, and adult), and breeding season (spring breeders, autumn breeders, and breeding unrelated to season).
Besides the CSV file containing all data used, the annotated R script (Ruzickova-etal-script.R) is attached to run statistical analyses and create figures.
Files and variables
File: pilis-species-2025.csv
Description: Abundances and changes in abundance for 8 carabid species and abundances of a particular trait category. Block represents replicates (1-6), and forestry treatments are preparation cuttings (P), clear-cuttings (CC), green tree retentions (R), gaps (G), and controls (C).
Species-specific abundance data: columns 4-11 for eight species, their names are abbreviated as follows:
Aba.ate = Abax parallelepipedus
Apt.bom = Aptinus bombarda
Car.cor = Carabus coriaceus
Car.hor = Carabus hortensis
Car.sch = Carabus scheidleri
Car.ull = Carabus ullrichii
Neb.bre = Nebria brevicollis
Pte.mel = Pterostichus melanarius
Trait-specific abundance data: columns 12-18 for seven trait categories based on habitat affinity, overwintering stadium, and breeding season, abbreviated as follows:
Hab.for = Habitat: Forest species
Hab.gen = Habitat: Generalist species
Win.ad = Overwintering: Adult
Win.bot = Overwintering: Larva and adult
Bre.who = Breeding: Whole season
Bre.spr = Breeding: Spring breeders
Bre.aut = Breeding: Autumn breeders
Columns 19 - N = total abundance
For more details, please follow the R script attached to this data file.
Code/software
The annotated R script (Ruzickova-etal-script.R) was built in R version 4.3.2, and the following packages are needed for a successful run of the script: tidyverse, MuMIn, glmmTMB, DHARMa, vegan, car, emmeans, multcomp, and patchwork.