Ecological drivers of carrion beetle (Staphylinidae: Silphinae) diversity on small to large mammals
Data files
Jul 31, 2024 version files 101.45 KB
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carrion.RDA
15.50 KB
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Kadaver.csv
82.37 KB
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README.md
3.58 KB
Abstract
Silphinae (Staphylinidae; carrion beetles) are important contributors to the efficient decomposition and recycling of carrion necromass. Their community composition is important for the provision of this ecosystem function and can be affected by abiotic and biotic factors. However, investigations are lacking on the effects of carrion characteristics on Silphinae diversity. Carrion body mass may affect Silphinae diversity following the More Individuals Hypothesis (MIH). The MIH predicts a higher number of species at larger carrion because higher numbers of individuals can be supported on the resource patch. Additionally, biotic factors like carrion species identity or decomposition stage, and the abiotic factors elevation, season, and temperature could affect Silphinae diversity. To test the hypotheses, we collected Silphinae throughout the decomposition of 100 carcasses representing ten mammal species ranging from 0.04 kg to 124 kg. Experimental carcasses were exposed in a mountain forest landscape in Germany during the spring and summer of 2021. We analysed Silphinae diversity using recently developed transformation models that considered the difficult data distribution we obtained. We found no consistent effect of carrion body mass on Silphinae species richness and, therefore, rejected the MIH. The carrion decomposition stage, in contrast, strongly influenced Silphinae diversity. Abundance and species richness increased with the decomposition process. Silphinae abundance increased with temperature and decreased with elevation. Furthermore, Silphinae abundance was lower in summer compared to spring, likely due to increased co-occurrence and competition with dipteran larvae in summer. Neither carrion species identity nor any abiotic factor affected Silphinae species richness following a pattern consistent throughout the seasons. Our approach combining a broad study design with an improved method for data analysis, and transformation models, revealed new insights into mechanisms driving carrion beetle diversity during carrion decomposition. Overall, our study illustrates the complexity and multifactorial nature of biotic and abiotic factors affecting diversity.
https://doi.org/10.5061/dryad.xd2547drq
The dataset contains the abundance data for all Silphinae species found during the experiment, as well as the species numbers. These were obtained by sampling the individual carcasses 4 times throughout the experiment (and therefore throughout carrion decomposition). For all of the 100 individual carcasses and the 4 sampling days, this results in a total of 400 data points (4 data points for each of 100 individual carcasses). These data points (as well as the individual carcasses) have a unique ID, which will be explained in the “Description of the data and file structure”. Furthermore, the dataset contains the seasons, carrion species, carrion decomposition stages, carcass presence, carrion body mass, coordinates of the carrion placement in the field, the elevation above sea level, and the soil surface and air temperature. All abbreviations and metrics will be explained in the “Description of the data and file structure”.
Description of the data and file structure
For each sampling event and each carcass, there is one data point giving abundance data for all Silphinae species detected, as well as a species number. Furthermore, the values for all biotic and abiotic factors, that might influence Silphinae diversity (carrion body mass, carrion species identity, carrion decomposition stage, elevation, temperature, and season) are included. This dataset can be used to test for the drivers of Silphinae diversity on small to large mammals and throughout the carrion decomposition process.
Each data point has a unique ID: e.g., F_01_HR_04
which states season_site-number_carrion-species_sampling-day
Abbreviations mean:
- F = Spring
- S = Summer
- site-number = site 1-5 (locations given in card included in the manuscript)
- HR = Mustela erminea/nivalis
- RT = Rattus norvegicus
- MD = Martes martes
- WB = Procyon lotor
- DS = Meles meles
- BB = Castor fiber
- FX = Vulpes vulpes
- RE = Capreolus capreolus
- WS = Sus scrofa
- RH = Cervus elaphus
- sampling-day = gives the day of emptying the Barber pitfall trap (that was collected for 48 h), this was conducted on days 04, 08, 16, and 23
Same ID without sampling-day specification is given for the individual carcasses.
Attribute explanation:
- Block = site (location given in map in manuscript)
- Carcass trophic level = division of carrion species into carnivore, omnivore, and herbivore
- Carcass species = given with common names
- Decay state = carrion decomposition stage divided into fresh, putrefaction, bloated, post-bloated, advanced decay, dry remains, and mummification
- Elevation = given in meters above sea level
- Elevation_kat = categorisation of elevation into low (< 1000 m asl) and high (> 1000 m asl)
Temperatures given in °C
Sharing/Access information
NAs that appear in the data (in the Kadaver.csv file or the carrion.RDA file) indicate events where no data could have been collected.
This is caused by:
- Decay state: NA means the carcass has been removed (in the carrion present column it says: no, because the carrion is not present anymore)
- Temperatures: NAs are in cells where no temperature data could be tracked due to problems with the TOMST data logger at this site/plot
Code/Software
There are two R-Script versions given. In one the elevation is included in the analysis, which is stated in the file name. In the other, it is not.