Bacterial symbionts are important fitness determinants of insects. Some hosts have independently acquired taxonomically related microbes to meet similar challenges, but whether distantly related hosts that live in tight symbiosis can maintain similar microbial communities has not been investigated. Varying degrees of nest sharing between Megalomyrmex social parasites (Solenopsidini) and their fungus-growing ant hosts (Attini) from the genera Cyphomyrmex, Trachymyrmex and Sericomyrmex allowed us to address this question, as both ant lineages rely on the same fungal diet, interact in varying intensities and are distantly related. We used tag-encoded FLX 454 pyrosequencing and diagnostic PCR to map bacterial symbiont diversity across the Megalomyrmex phylogenetic tree, which also contains free-living generalist predators. We show that social parasites and hosts share a subset of bacterial symbionts, primarily consisting of Entomoplasmatales, Bartonellaceae, Acinetobacter, Wolbachia and Pseudonocardia and that Entomoplasmatales and Bartonellaceae can co-infect specifically associated combinations of hosts and social parasites with identical 16S rRNA genotypes. We reconstructed in more detail the population-level infection dynamics for Entomoplasmatales and Bartonellaceae in Megalomyrmex symmetochus guest ants and their Sericomyrmex amabilis hosts. We further assessed the stability of the bacterial communities through a diet manipulation experiment and evaluated possible transmission modes in shared nests such as consumption of the same fungus garden food, eating of host brood by social parasites, trophallaxis and grooming interactions between the ants, or parallel acquisition from the same nest environment. Our results imply that cohabiting ant social parasites and hosts may obtain functional benefits from bacterial symbiont transfer even when they are not closely related.
97% OTUs 454 dataset
Following 454 sequencing of the 16s rRNA gene of bacterial communities of 33 samples of attine ants, Megalomyrmex ants and fungus gardens, 923 bacterial OTUs (operational taxonomic units at 97% identity) were identified. The zip file contains an OTU table showing the distribution of sequencing reads for all OTUs across the 33 samples, a taxonomy file with the classification of the OTUs based on the Greengenes reference set (May 2013 release), a fasta file with all 923 representative sequences for these OTUs, and a mapping file containing the barcode sequence for each of the 33 samples that were multiplex sequenced.
OTU97_454Dataset.zip
Unique sequences 454 dataset
Following 454 sequencing of the 16s rRNA gene of bacterial communities of 33 samples of attine ants, Megalomyrmex ants and fungus gardens, 4882 unique bacterial sequences were identified. The zip file contains a table showing the distribution of sequencing reads for all unique sequences across the 33 samples, the taxonomic classification of these sequences based on the Greengenes reference set (May 2013 release), and a fasta file with all the 4882 unique sequences.
UniqueSequences_454Dataset.zip
97% OTUs MiSeq diet experiment dataset
Following MiSeq sequencing of the 16s rRNA gene of bacterial communities of 36 samples of attine ants, Megalomyrmex ants and fungus gardens collected after a diet manipulation experiment, 852 bacterial OTUs (operational taxonomic units at 97% identity) were identified. The zip file contains an OTU table showing the distribution of sequencing reads for all OTUs across the 36 samples, a fasta file with all 852 representative sequences for these OTUs and two taxonomy files linking the taxonomic classification of the OTUs based on the Greengenes reference set (May 2013 release) to the OTU IDs found in the OTU table and the sequence identifiers found in the fasta file.
OTU97_MiSeqDietExp.zip
Sericomyrmex mtCOI alignment and phylogenetic tree
The zip file contains the alignment in fasta format and the maximum likelihood phylogeny in newick format built from the 384 bp of the mitochondrial Cytochrome Oxidase I (mtCOI) gene amplified from 60 colonies of Sericomyrmex fungus-growing ants collected across the Panama Canal Zone.
Sericomyrmex_COI_alignment_and_tree.zip
Entomoplasmatales 16S rRNA alignment and phylogenetic tree
The zip file contains the alignment in fasta format and phylogenetic tree in newick format built from ca. 970 bp of the 16S rRNA gene amplified from Entomoplasmatales symbionts of Megalomyrmex ants, attine ants and fungus gardens aligned with closely related strains from GenBank.
Entomoplasmatales_16SrRNA_alignment_and_tree.zip
Bartonellaceae 16S rRNA alignment and phylogenetic tree
The zip file contains the alignment in fasta format and the phylogenetic tree in newick format built from ca. 970 bp of the 16S rRNA gene amplified from Bartonellaceae symbionts of Megalomyrmex ants and attine ants aligned with closely related strains from GenBank.
Bartonellaceae_16SrRNA_alignment_and_tree.zip
Wolbachia wsp alignment and phylogenetic tree
The zip file contains the alignment in fasta format and the phylogenetic tree in newick format built from ca. 520 bp of the Wolbachia surface protein (wsp) gene amplified from Wolbachia symbionts of Megalomyrmex ants and attine ants aligned with closely related strains from GenBank.
Wolbachia_wsp_alignment_and_tree.zip
Input alignments for Oligotyping analyses
The zip file contains the five alignments in fasta format of the 16S rRNA gene sequences of Entomoplasmatales, Bartonellaceae, Acinetobacter, Wolbachia and Pseudonocardia extracted from the 454 dataset, which were used as input for the Oligotyping analyses.
Oligotyping_input_alignments.zip