Data from: Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia

Siraj AS, Rodriguez-Barraquer I, Barker CM, Tejedor-Garavito N, Harding D, Lorton C, Lukacevic D, Oates G, Espana G, Kraemer MUG, Manore C, Johansson MA, Tatem AJ, Reiner RC, Perkins TA

Date Published: July 11, 2018

DOI: https://doi.org/10.5061/dryad.83nj1.2

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Title Weekly mean temperature at 2.5 arc-minutes
Downloaded 4 times
Description Raster brick of weekly mean temperature calculated as the average of the daily mean temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmean_wk151025 has mean temperature for the week that starts on October 25, 2015.
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Title Weekly minimum temperature at 2.5 arc-minutes
Downloaded 2 times
Description Raster brick of weekly minimum temperature calculated as the average of the daily minimum temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmin_wk151025 has minimum temperature for the week that starts on October 25, 2015.
Download min_temperature.zip (62.04 Mb)
Download README.txt (796 bytes)
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Title Weekly maximum temperature at 2.5 arc-minutes
Downloaded 1 time
Description Raster brick of weekly maximum temperature calculated as the average of the daily maximum temperature (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named tmax_wk151025 has maximum temperature for the week that starts on October 25, 2015.
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Download README.txt (869 bytes)
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Title Weekly relative humidity at 2.5 arc-minutes
Downloaded 1 time
Description Raster brick of weekly average relative humidity calculated as the average of the daily mean relative humidity (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named rh_wk151025 has average relative humidity for the week that starts on October 25, 2015.
Download rel_humidity.zip (62.10 Mb)
Download README.txt (929 bytes)
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Title Weekly MODIS Terra NDVI at 2.5 arc-minutes
Description Raster brick of weekly average NDVI from NASA's Terra satellite and MODIS sensor (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named ndvi_modis_terra_wk151025 has the NDVI values for the week that starts on October 25, 2015.
Download ndvi_modis_terra.zip (62.40 Mb)
Download README.txt (974 bytes)
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Title Weekly MODIS Aqua NDVI at 2.5 arc-minutes
Description Raster brick of weekly average NDVI from NASA's Aqua satellite and MODIS sensor (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named ndvi_modis_aqua_wk151025 has average NDVI for the week starting on October 25, 2015.
Download ndvi_modis_aqua.zip (62.50 Mb)
Download README.txt (969 bytes)
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Title Weekly precipitation at 2.5 arc-minutes
Description Raster brick of weekly total precipitation calculated as the total of the daily precipitation (a total of 143 weeks between Jan 5, 2014 and Oct 1, 2016), in GRI format, at a resolution of 2.5 arc-minutes. Layer names indicate the date each week starts on. For example, the layer named precip_wk151025 has precipitation for the week that starts on October 25, 2015.
Download README.txt (856 bytes)
Download precipitation.zip (1.051 Mb)
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Title Aedes aegypti population at 2.5 arc-minutes
Description Raster brick of ratio of Aedes aegypti population to human population at each week of the year (a total of 52 weeks), in GRI format, at a resolution of 2.5 arc-minutes.
Download aegypti_population.zip (9.948 Mb)
Download README.txt (597 bytes)
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Title Gridded population in 2015 at 3 arc-seconds
Downloaded 1 time
Description Colombia population in 2015. The file is in BIL format, at a resolution of 3 arc-seconds.
Download wpop_ppp_v2b_col_2015_0_05m.zip (479.3 Mb)
Download README.txt (821 bytes)
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Title Gridded births in 2015 at 3 arc-seconds
Description Colombia births in 2015. The file is in BIL format, at a resolution of 3 arc-seconds.
Download wpop_births_col_2015_0_05m.zip (400.2 Mb)
Download README.txt (701 bytes)
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Title Gridded urban population in 2015 at 15 arc-seconds
Downloaded 1 time
Description Colombia urban population in 2015 obtained by multiplying WorldPop gridded population by urban extent binary raster file. the file in BIL format at a resolution of 15 arc-seconds.
Download urban_pop_col_0_25m.zip (241.7 Kb)
Download README.txt (541 bytes)
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Title Gridded travel time at 30 arc-seconds
Description Colombia travel time (in minutes) to the nearest city of 50,000 or more population in year 2000. The file is in BIL format, at a resolution of 30 arc-seconds.
Download travel_time_50k_col_0_5m.zip (5.514 Mb)
Download README.txt (590 bytes)
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Title Gridded gross cell product at 2.5 arc-minutes
Description Per capita gross cell product in 2005 $US for Colombia cropped to match all other raster outputs. The file is in BIL format, at a resolution of 2.5 arc-minutes (resampled from the original 60 arc-minutes raster file).
Download gecon_col_pcppp_2005_2_5m.zip (6.973 Kb)
Download README.txt (777 bytes)
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Title Weekly Zika cases
Description Weekly Zika cases at municipality, department and national levels (in .csv format).
Download weekly_zika_cases.zip (32.60 Kb)
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Title Weekly covariates aggregated at municipality level
Downloaded 1 time
Description Time series of weekly covariates aggregated at municipality level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download spatial_aggregates_municip.zip (6.938 Mb)
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Title Weekly covariates aggregated at department level
Description Time series of weekly covariates aggregated at department level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download spatial_aggregates_dept.zip (222.7 Kb)
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Title Weekly covariates aggregated at national level
Downloaded 1 time
Description Time series of weekly covariates aggregated at national level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download spatial_aggregates_national.zip (14.38 Kb)
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Title Weekly weighted covariates aggregated at municipality level
Downloaded 1 time
Description Time series of weekly covariates, weighted by population, aggregated at municipality level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download weighted_spatial_aggregates_municip.zip (6.824 Mb)
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Title Weekly weighted covariates aggregated at department level
Description Time series of weekly covariates, weighted by population, aggregated at department level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download weighted_spatial_aggregates_dept.zip (223.7 Kb)
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Title Weekly weighted covariates aggregated at national level
Description Time series of weekly covariates, weighted by population, aggregated at national level. This .zip file contains eight tables (in .csv format) of time series for aegypti population, maximum temperature, mean temperature, minimum temperature, NDVI MODIS Aqua, NDIV MODIS Terra, precipitation and relative humidity.
Download weighted_spatial_aggregates_national.zip (14.62 Kb)
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Title Fixed time covariates aggregated at all levels
Description Fixed time covariates aggregated at municipality, department and national levels (in .csv format). This .zip file contains three tables (in .csv format), one for each level, with data on population, births, urban population, mean gross cell product and mean travel time.
Download spatial_aggregate_non_timeseries.zip (45.98 Kb)
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Title Spatial time series movies ZIKV cases and environmental drivers.
Description Spatial time series movies ZIKV cases and environmental drivers at weekly time step and municipality level (in .MP4 format). This file includes nine movies: weekly number of cases, cumulative number of cases, average NDVI (Aqua), average NDVI (Terra), total precipitation, relative humidity, minimum temperature, mean temperature and maximum temperature.
Download README.zip (250.4 Mb)
Download spatial_timeseries_movies.zip (250.4 Mb)
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When using this data, please cite the original publication:

Siraj AS, Rodriguez-Barraquer I, Barker CM, Tejedor-Garavito N, Harding D, Lorton C, Lukacevic D, Oates G, Espana G, Kraemer MUG, Manore C, Johansson MA, Tatem AJ, Reiner RC, Perkins TA (2017) Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia. Scientific Data 5: 180073. https://doi.org/10.1038/sdata.2018.73

Additionally, please cite the Dryad data package:

Siraj AS, Rodriguez-Barraquer I, Barker CM, Tejedor-Garavito N, Harding D, Lorton C, Lukacevic D, Oates G, Espana G, Kraemer MUG, Manore C, Johansson MA, Tatem AJ, Reiner RC, Perkins TA (2018) Data from: Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia. Dryad Digital Repository. https://doi.org/10.5061/dryad.83nj1.2
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