Data from: New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus)

Doyle JM, Bell DA, Bloom PH, Emmons G, Fesnock A, Katzner TE, LaPré L, Leonard K, SanMiguel P, Westerman R, DeWoody JA

Date Published: April 15, 2018

DOI: https://doi.org/10.5061/dryad.8b0s04t

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Title Falco mexicanus SNP genotypes
Downloaded 12 times
Description 103 Prairie falcons were genotyped at 143 SNPs. Sampling locations included the San Francisco East Bay Area, Pinnacles National Park, the Mojave Desert, Northern California and the Snake River Birds of Prey National Conservation Area in Idaho. SNPs are coded as follows: Adenine=1, Cytosine=2, Guanine=3, Thymine=4, missing data = 0.
Download SNP_genotypes.xlsx (111.1 Kb)
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Title Falco mexicanus genome annotation
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Description 16,320 genes were annotated in the Falco mexicanus genome, this is the .gff file associated with the annotations.
Download genome.all.gff (54.42 Mb)
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Title Falco mexicanus mitochondrial genome assembly
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Description The F. mexicanus mitochondrial genome was assembled using MITObim vs. 1.6. The genome assembly is 17,117 bp in length and characterized by 13 protein-coding genes, two ribosomal subunit genes (rRNA), 22 transfer RNA genes and a control region.
Download complete_PRFA_mito_30March2017_307.fasta (17.90 Kb)
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Title Falco mexicanus genome annotation - protein sequences
Downloaded 4 times
Description 16,320 genes were annotated in the Falco mexicanus genome, this is the .fasta file with predicted protein sequences.
Download AbySS_min10000_falcon2015_.proteins.fasta (9.789 Mb)
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Title Falco mexicanus genome assembly scaffolds
Downloaded 5 times
Description The Falco mexicanus draft genome was generated from paired-end, mate-paired and long reads using ABySS vs. 1.5.2 and SPAdes 3.1.1. This file includes the scaffolds greater than 10 kb in length.
Download AbySS_min10000.fasta (1.175 Gb)
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When using this data, please cite the original publication:

Doyle JM, Bell DA, Bloom PH, Emmons G, Fesnock A, Katzner TE, LaPré L, Leonard K, SanMiguel P, Westerman R, DeWoody JA (2018) New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus). BMC Genomics 19: 233. https://doi.org/10.1186/s12864-018-4615-z

Additionally, please cite the Dryad data package:

Doyle JM, Bell DA, Bloom PH, Emmons G, Fesnock A, Katzner TE, LaPré L, Leonard K, SanMiguel P, Westerman R, DeWoody JA (2018) Data from: New insights into the phylogenetics and population structure of the prairie falcon (Falco mexicanus). Dryad Digital Repository. https://doi.org/10.5061/dryad.8b0s04t
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