Data from: Automated morphological feature assessment for zebrafish embryo developmental toxicity screens

Teixido E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S

Date Published: September 27, 2018

DOI: https://doi.org/10.5061/dryad.gv144d5

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title KNIME workflow to evaluate morphological features using the FishInspector software
Downloaded 3 times
Description This workflow allows to measure morphological features of zebrafish larvae (48hpf or 96 hpf) using the output file (json format) from the FishInspector software. The file should be imported to the KNIME open source analytical platform.
Download FishInspector VAST_ToxSci.zip.knwf (2.215 Mb)
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Title Heart rate analysis zebrafish
Downloaded 2 times
Description This workflow allows to measure the heart frequence of zebrafih larvae from videos obtained with the VAST BioImager system. The workflow should be imported to the KNIME open analytical platform.
Download Heart rate analysis_KNIME.zip.knwf (93.75 Kb)
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Title Knime workflow to rotate and crop zebrafish images
Downloaded 2 times
Description This workflow automatically rotates, crop the images and draws a virtual capillary based on a ImageJ macro.The workflow can easily be adapted to accommodate different image properties depending on the source of the image (e.g. intensity, contrast).
Download Rotate and crop image.knwf (89.23 Kb)
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When using this data, please cite the original publication:

Teixidó E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S (2018) Automated morphological feature assessment for zebrafish embryo developmental toxicity screens. Toxicological Sciences, online in advance of print. https://doi.org/10.1093/toxsci/kfy250

Additionally, please cite the Dryad data package:

Teixido E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S (2018) Data from: Automated morphological feature assessment for zebrafish embryo developmental toxicity screens. Dryad Digital Repository. https://doi.org/10.5061/dryad.gv144d5
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