Data from: Automated morphological feature assessment for zebrafish embryo developmental toxicity screens

Teixido E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S

Date Published: October 23, 2018

DOI: https://doi.org/10.5061/dryad.gv144d5.2

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Title KNIME workflow to evaluate morphological features using the FishInspector software
Description This workflow allows to measure morphological features of zebrafish larvae (48hpf or 96 hpf) using the output file (json format) from the FishInspector software. The file should be imported to the KNIME open source analytical platform.
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At the request of the author, this item is embargoed until the associated publication appears.
Title Heart rate analysis zebrafish
Description This workflow allows to measure the heart frequence of zebrafih larvae from videos obtained with the VAST BioImager system. The workflow should be imported to the KNIME open analytical platform.
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At the request of the author, this item is embargoed until the associated publication appears.
Title Knime workflow to rotate and crop zebrafish images
Description This workflow automatically rotates, crop the images and draws a virtual capillary based on a ImageJ macro.The workflow can easily be adapted to accommodate different image properties depending on the source of the image (e.g. intensity, contrast).
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At the request of the author, this item is embargoed until the associated publication appears.
Title Output raw data
Description Contains the output data (morphometric parameters, mean traveled distance -LMR- and heart rate) obtained from image analysis from embryos exposed to the chemicals as described in the article.
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At the request of the author, this item is embargoed until the associated publication appears.

When using this data, please cite the original publication:

Teixidó E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S (2018) Automated morphological feature assessment for zebrafish embryo developmental toxicity screens. Toxicological Sciences, online in advance of print. https://doi.org/10.1093/toxsci/kfy250

Additionally, please cite the Dryad data package:

Teixido E, Kießling TR, Krupp E, Quevedo C, Muriana A, Scholz S (2018) Data from: Automated morphological feature assessment for zebrafish embryo developmental toxicity screens. Dryad Digital Repository. https://doi.org/10.5061/dryad.gv144d5.2
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