Data from: Pluck or luck: does trait variation or chance drive variation in lifetime reproductive success?

Snyder RE, Ellner SP

Date Published: February 12, 2018

DOI: https://doi.org/10.5061/dryad.pd959.2

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Title README
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Title age2SizePars.R
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Description Data file used by IdahoIPMFunctions.R
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Title BaselineParameterSets.Rdata
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Description Data file used by SizeQualityFunctionsPlot.R and SizeQualityVarPartition.R
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Title growPars.csv
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Description Data file used by IdahoIPMFunctions.R
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Title IdahoIPMFunctions.R
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Description Defines functions needed by IdahoIPMLifeCycleStats.R and IdahoWinnerTraits2Plots.R
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Title IdahoIPMLifeCycleStats.R
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Description Code to generate Figs. 5 and 6
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Title IdahoWinnerTraits2Plots.R
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Description Code to generate Figs. 7 and 8
Download IdahoWinnerTraits2Plots.R (7.059 Kb)
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Title KittiwakeMatrices.R
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Description Data used by KittiwakeWinnerTraitsFecSurv3.R. Demographic data are taken from Steiner, U. K., S. Tuljapurkar, and S. H. Orzack. 2010. Dynamic heterogeneity and life history variability in the kittiwake. Journal of Animal Ecology 79:436–444 and Cam, E., W. A. Link, E. G. Cooch, J.-Y. Monnat, and E. Danchin. 2002. Individual covariation in life-history traits: seeing the trees despite the forest. The American Naturalist 159:96–105.
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Title KittiwakeWinnerTraitsFecSurv3.R
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Description Code for generating Fig. 4
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Title MegamatrixFunctions.R
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Description Defines functions needed by KittiwakeWinnerTraitsFecSurv3.R and SizeQualityVarPartition.R
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Title RpartitionItero.R
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Description Code to generate Figs. 1, 22, and 23
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Title RpartitionSemel.R
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Description Code to generate Figs. 2 and 24
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Title SeedlingSurvPars.csv
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Description Data needed by IdahoIPMFunctions.R
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Title SimplePartitionSimulate.R
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Description Code to generate Fig. 21
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Title SizeQualityFunctions.R
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Description Defines functions needed by SizeQualityFunctionsPlot.R and SizeQualityVarPartition.R
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Title SizeQualityFunctionsPlot.R
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Description Code to generate Figs. 9--13
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Title SizeQualityVarPartition.R
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Description Code to generate Figs. 10--13
Download SizeQualityVarPartition.R (10.09 Kb)
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Title Standard Graphical Pars.R
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Description Defines functions needed by IdahoIPMLifeCycleStats.R, IdahoWinnerTraits2Plots.R, KittiwakeWinnerTraitsFecSurv3.R, SizeQualityFunctionsPlot.R, and SizeQualityVarPartition.R
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Title SurvPars.csv
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Description Data needed by IdahoIPMFunctions.R
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Title TwoStageWinnerTraits2Plots.R
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Description Code to generate Fig. 3
Download TwoStageWinnerTraits2Plots.R (6.134 Kb)
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Title Utilities.R
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Description Defines functions needed by IdahoIPMLifeCycleStats.R, IdahoWinnerTraits2Plots.R, KittiwakeWinnerTraitsFecSurv3.R, SizeQualityFunctionsPlot.R, and SizeQualityVarPartition.R
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Title wPars.csv
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Description Data needed by IdahoIPMFunctions.R
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Title Compare_seedlings.R
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Description Exploratory data analysis to compare seedlings and others. Referred to in Appendix C.
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Title fetchDemoData-allWs.R
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Description dependency of Compare_seedlings.R, Fit_Growth_JAGS.R, Fit_Growth_Older_GAM.R, Fit_Growth_Seedlings.R, Fit_Survival_Older.R, Fit_Survival_Seedlings.R.
Download fetchDemoData-allWs.R (5.405 Kb)
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Title Fit_Growth_JAGS.R
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Description Produces numbers in Table C3.
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Title jags_growth.txt
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Description Dependency of Fit_Growth_JAGS.R.
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Title Fit_Growth_Older_GAM.R
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Description Produces Figure C6.
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Title Fit_Growth_Seedlings.R
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Description Produces Figure C5.
Download Fit_Growth_Seedlings.R (4.098 Kb)
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Title Fit_Survival_Older.R
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Description Produces numbers in Table C1.
Download Fit_Survival_Older.R (3.563 Kb)
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Title Fit_Survival_Seedlings.R
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Description Produces numbers in Table C1, produces Figure C1.
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Title JAGS_tables_v3.R
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Description Produces numbers in Table C3.
Download JAGS_tables_v3.R (4.802 Kb)
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Title KittiwakeVarPartitionTable.R
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Description Calculates the contribution of trait variation to variance in LRS and lifespan for the kittiwakes, as discussed in the first full paragraph after eq. 7.
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Title ModelingW.R
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Description Produces numbers in Table C4, produces Figure C7.
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Title SizeQualityElasticityAnalysis.R
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Description Produces numbers in Table B2.
Download SizeQualityElasticityAnalysis.R (3.578 Kb)
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Title TrimQuadrats.R
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Description dependency of Compare_seedlings.R, Fit_Growth_Older_GAM.R, Fit_Growth_Seedlings.R, Fit_Survival_Older.R, Fit_Survival_Seedlings.R.
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When using this data, please cite the original publication:

Snyder RE, Ellner SP (2018) Pluck or luck: does trait variation or chance drive variation in lifetime reproductive success?. The American Naturalist 191(4): E90-E107. https://doi.org/10.1086/696125

Additionally, please cite the Dryad data package:

Snyder RE, Ellner SP (2018) Data from: Pluck or luck: does trait variation or chance drive variation in lifetime reproductive success? Dryad Digital Repository. https://doi.org/10.5061/dryad.pd959.2
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