Data from: Genetic redundancy fuels polygenic adaptation in Drosophila

Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R, Schlötterer C

Date Published: February 6, 2019

DOI: https://doi.org/10.5061/dryad.rr137kn

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title phenotypic data
Downloaded 1 time
Download phenotypic_data.zip (6.003 Kb)
Download README.docx (13.35 Kb)
Details View File Details
Title Jaccard indices
Downloaded 1 time
Download Jaccard.zip (499.4 Kb)
Download README.docx (12.88 Kb)
Details View File Details
Title replicate frequency spectrum
Downloaded 3 times
Download RFS.zip (172.5 Kb)
Download README.docx (13.39 Kb)
Details View File Details
Title TE insertions and frequencies at F60
Downloaded 1 time
Description This file contains the frequency of TE insertions in 10 hot-evolved replicates at generation 60. Format specification of this file can be found in manual of PopoolationTE2 (Kofler R, Gomez-Sanchez D, Schlötterer C. PoPoolationTE2: Comparative Population Genomics of Transposable Elements Using Pool-Seq. Mol Biol Evol. 2016;33(10):2759–64.). Column 1: 1-10 since it’s a joint analysis of 10 replicates, column 2: chromosome, column3 : position, column 4: strand of the TE insertion; plus (sense), minus (antisense) or point (unknown), column 5: TE family, column 6: order, column 7: support for the TE insertions; either a single forward signature (F) or a single reverse signature (R) or a matching pair of forward and reverse signatures (FR), column 8: comment (empty or "-" in newer versions), column 9-18: the population frequency of the TE in replicate 1 to 10 respectively.
Download F60_10Reps.teinsertions (2.845 Mb)
Details View File Details
Title F0-F60 sync file, CMH and FET pvalues, haplotype block IDs
Downloaded 9 times
Download README.docx (13.16 Kb)
Download F0-F60SNP_CMH_FET_blockID.sync.zip (1.541 Gb)
Details View File Details
Title evolved haplotypes
Downloaded 5 times
Download evolved_haplos.zip (3.050 Gb)
Download README.docx (12.19 Kb)
Details View File Details
Title selection coefficients and starting allele frequencies
Downloaded 1 time
Download S_SAF.zip (29.39 Kb)
Download README.docx (12.47 Kb)
Details View File Details
Title number of selected allele
Downloaded 2 times
Description This file has 10 columns which correspond to the number of allele that have >=0.1 frequency change (method 1) in 10 replicates respectively. For a description of method 1, see Materials and Methods: Different approaches to determine the presence of selected alleles and their frequencies.
Download allele_num_perReplicate.txt (29 bytes)
Details View File Details

When using this data, please cite the original publication:

Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R, Schlötterer C (2019) Genetic redundancy fuels polygenic adaptation in Drosophila. PLOS Biology 17(2): e3000128. https://doi.org/10.1371/journal.pbio.3000128

Additionally, please cite the Dryad data package:

Barghi N, Tobler R, Nolte V, Jakšić AM, Mallard F, Otte KA, Dolezal M, Taus T, Kofler R, Schlötterer C (2019) Data from: Genetic redundancy fuels polygenic adaptation in Drosophila. Dryad Digital Repository. https://doi.org/10.5061/dryad.rr137kn
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Search for data

Be part of Dryad

We encourage organizations to: