Data from: Cleaner fish escape salmon farms and hybridize with local wrasse populations

Faust E, Halvorsen KT, Andersen P, Knutsen H, Carl A

Date Published: February 16, 2018

DOI: https://doi.org/10.5061/dryad.tv553

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Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title genepop_file_4357_SNPs
Downloaded 4 times
Description Text file (genepop input format) containing the genotypes used for population genomics analysis. The file contains the genotypes of 4357 polymorphic SNPs typed in 240 individuals with 2bRAD, 40 from each of the 6 population samples. The population codes are FKH=Flatanger, SMAU=Austevoll, SMID=Stavanger, SMTF=Kristiansand, SMST=Strömstad and SMKB=Kungsbacka.
Download west_genepop4357ID.txt (5.282 Mb)
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Title vcf_genotypes_4372_SNPs
Downloaded 3 times
Description VCF file containing filtered polymorphic SNPs from 2bRAD sequencing. The file contains the genotypes of 4372 SNPs typed in 240 individuals, from 6 population samples. The population codes are FKH=Flatanger, SMAU=Austevoll, SMID=Stavanger, SMTF=Kristiansand, SMST=Strömstad and SMKB=Kungsbacka. Following loci vere removed in later analysis due to HW deviations as stated in associated paper. locus56691 locus38851 locus64904 locus43866 locus70853 locus45067 locus33903 locus31804 locus60160 locus51060 locus67817 locus41336 locus61157 locus40922 locus68635
Download west.filt.maf0.01.recode.vcf (18.73 Mb)
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Title 200 SNP battery in Newhybrids format
Downloaded 1 time
Description DAT text file (newhybrid input format) containing the genotypes used for population genomics analysis. The file contains the genotypes of 200 polymorphic SNPs typed in 240 individuals with 2bRAD, 40 from each of the 6 population samples. The sample order is Flatanger, Austevoll, Stavanger, Kristiansand, Strömstad, Kungsbacka. Individual order follows order in Sampleinfo_metadata.txt file.
Download newhybrid200SNPs.dat (192.0 Kb)
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Title Sample info
Downloaded 3 times
Description Tab delimited text file containing meta data for 240 individual, 40 from each sample. Listed is Sample_ID, Individual_ID, Sex, Total_length, Age, Lat, Lon, Date and Technical_replicates.
Download Sampleinfo_metadata.txt (15.25 Kb)
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When using this data, please cite the original publication:

Faust E, Halvorsen KT, Andersen P, Knutsen H, Carl A (2018) Cleaner fish escape salmon farms and hybridize with local wrasse populations. Royal Society Open Science 5(3): 171752. https://doi.org/10.1098/rsos.171752

Additionally, please cite the Dryad data package:

Faust E, Halvorsen KT, Andersen P, Knutsen H, Carl A (2018) Data from: Cleaner fish escape salmon farms and hybridize with local wrasse populations. Dryad Digital Repository. https://doi.org/10.5061/dryad.tv553
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