Effects of incubation temperature on the upper thermal tolerance of the imperiled longfin smelt (Spirinchus thaleichthys)
Data files
Oct 23, 2023 version files 459.95 KB
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Cardiology_Analysis_Datasheet.xlsx
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Heart_rates_compiled.xlsx
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README.md
Abstract
Upper thermal limits in many fish species are limited, in part, by the heart’s ability to meet increased oxygen demand during high temperatures. Cardiac plasticity induced by developmental temperatures can therefore influence thermal tolerance. Here, we determined how incubation temperatures during the embryonic stage influence cardiac performance across temperatures during the sensitive larval stage of the imperiled longfin smelt. We transposed a cardiac assay for larger fish to newly hatched larvae that were incubated at 9, 12, or 15 ℃. We measured heart rate over increases in temperature to identify the Arrhenius breakpoint temperature (TAB), a proxy for thermal optimum, and two upper thermal limit metrics: temperature when heart rate is maximized (Tpeak) and when cardiac arrhythmia occurs (TArr). Higher incubation temperatures increased TAB, Tpeak, and TArr, but high interindividual variation in all three metrics resulted in great overlap of individuals at TAB, Tpeak, and TArr across temperatures. We found that the temperature where 10% of individuals reached Tpeak or TArr, and temperature where number of individuals at TAB relative to Tpeak (ΔN(TAB, Tpeak)) is maximized correlated more closely with upper thermal limits and thermal optima inferred from previous studies compared to mean values of the three cardiac metrics, respectively. Larvae of embryos incubated at 15 ℃ did not have a higher temperature where ΔN(TAB, Tpeak) is maximized compared to larvae incubated at 9 or 12 ℃, suggesting that incubation temperatures beyond 12–15 ℃ are unlikely to shift larval thermal optima to match warming waters. Overall, by measuring cardiac performance across temperatures, we defined upper thermal limits (10% thresholds, Tpeak: 14.4–17.5 ℃; TArr: 16.9–20.2 ℃) and optima (ΔN(TAB, Tpeak): 12.4–14.4 ℃) that can guide conservation strategies for longfin smelt, and demonstrated the potential of this cardiac assay for informing conservation plans for the early life stages of fish.
README: Effects of incubation temperature on the upper thermal tolerance of the imperiled longfin smelt (Spirinchus thaleichthys)
https://doi.org/10.25338/B8H06D
Contact: Yuzo Yanagitsuru, yyanagit@ucdavis.edu, yuzo.yanagitsuru@gmail.com
All analyses were conducted in R version 3.6.3
File: LFS_cardio_breakpoint.R includes script that calculated all breakpoint temperatures
File: lfs_cardio_stats.R includes script for statistical analyses.
Description of column headers
File: Heart_rates_compiled.xlsx
'Analyzed dataset' includes data that were used for analyses.
'with missing measurements' includes data that were incorrectly assayed (temperature steps were missing during assay)
- Date - Date assay conducted
- ID - Individual fish identification number
- Clutch - Clutch/cross identification (i.e. ID for different pairs of male/female broodfish)
- Temperature - Temperature in degrees Celsius that heart rates were measured
- Acclimation - Incubation temperatures of individuals that were measured
- BPM - Heart rate in beats per minute measured
- Arrhythmia - Identifier for reached arrhythmia or didn't reach arrhythmia. 0 = not arrhythmic, 1 = arrhythmic
- Peaked - Identifier for reached peak heart rate or didn't reach peak heart rate. 0 = not peaked, 1 = peaked
- Notes - Visually measured indicates that heart rates were measured by human observation as opposed to Danioscope software.
File: Cardiology_Analysis_Datasheet.xlsx
- ID - individual fish identification number
- Acclimation - incubation temperatures of individuals that were measured
- Clutch - clutch/cross identification (i.e. id for different pairs of male/female broodfish)
- Batch - identification number for grouping of individuals measured together (i.e. fish that have the same batch number were measured at the same time)
- Tarr - temperature at which arrhythmia was first observed
- Breakpoint - Arrhenius breakpoint temperature, the temperature at which the rate of exponential increase in heart rate changes
- Tpeak - temperature at which heart rate was at its maximum
- maxhr - heart rate in beats per minute when heart rate was at its maximum
- minhr - heart rate in beats per minute when heart rate was at its minimum
- Slopes - rate of increase in heart rate prior to reaching Arrhenius breakpoint temperature. Slopes were calculated from plots of Arrhenius temperatures (1/1000*temperature) vs ln(heart rate)
Some values are not available for Tarr and Tab because some individuals did not become arrhythmic and others had a continual increase in heart rate from which Tab could not be determined