Data for: The evolution of enclosed nesting in passerines is shaped by competition, energetic costs and predation threat
Data files
Sep 11, 2023 version files 785.28 KB
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README.md
5.30 KB
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Supplementary_Data_S1.csv
779.98 KB
Abstract
Many bird species breed in enclosed nests which may provide better protection against predation and climatic conditions compared to open nests and are generally associated with larger clutch sizes and slower offspring growth. Here we show that different enclosed nesting strategies are each linked to behaviors with very different costs and benefits on a macroevolutionary scale. Using a detailed dataset of nest structure and location from the order Passeriformes we employed phylogenetic comparative methods to evaluate (1) how predation, competition, design complexity and energetic costs have shaped evolutionary transitions between different nesting strategies and (2) whether these strategies also have distinct relationships with life-history traits. We find that flexible strategies (i.e., nesting in both open and enclosed sites) as well as energetically demanding strategies are evolutionarily unstable, indicating the presence of underlying ecological trade-offs between anti-predator protections, construction costs and competition. We confirm that species with enclosed nests have larger clutch sizes and longer development and nestling periods compared to open nesters, but only species that construct enclosed nests rather than compete for pre-existing cavities spend more time incubating and are concentrated in the tropics. Flexible strategies prevail in seasonal environments and are linked to larger clutches – but not longer development – compared to nesting in the open. Overall, our results suggest that predation, competition and energetic costs affect the evolution of nesting strategies, but via distinct pathways, and that caution is warranted when generalizing about the functions of enclosed nest designs in birds.
README: The evolution of enclosed nesting in passerines is shaped by competition, energetic costs and predation threat: Data
https://doi.org/10.5061/dryad.00000008c
This dataset (Supplementary_Data_S1.csv) contains information on nest location (n = 4,105) and structure (n = 3,949) for passerine species alongside with a set of life-history, biogeographical and environmental variables associated with each species.
Description of the data and file structure
Variable list
Taxonomy
- HBW_name: scientific species names used in Handbook of the Birds of the World or HBW (del Hoyo et al. (2019))
- Tree_name: scientific species names used in Jetz et al. (2012)
- HBW_species_common_name: species common names used in HBW
- HBW_family: scientific family names used in HBW
- HBW_family_common_name: family common names used in HBW
Life-history traits
- Body_mass..g: geometric mean of average mass in g for males and females, except for cases where the mass of only one sex is known (Tobias et al. 2022)
- Clutch_size: average clutch size per species (HBW, Birds of North America or BNA (Cornell Lab of Ornithology 2019a), the Neotropical Birds Online or NBO (Cornell Lab of Ornithology 2019b), the Birds of the Western Palearctic or BWP (Cramp et al. 2008))
- Incubation_period..days: average number of days from laying the last egg of the clutch until it hatches (HBW, BNA, NBO, BWP)
- Nestling_period..days: average number of days from hatching until leaving the nest (HBW, BNA, NBO, BWP)
- Developmental_period..days: sum of incubation and nestling period
- Migration_status: non-migratory ('Not a Migrant,'Nomadic') and migratory ('Full Migrant', 'Altitudinal Migrant') strategies from BirdLife International (2019)
- Migration_coded: non-migratory - '0', migratory - '1'
Biogeography
- Range_midpoint_latitude: latitude of species' range midpoint (range polygons from BirdLife International (2019))
- N_S: hemisphere of species' range midpoint: Northern ('N') or Southern ('S')
- Insularity: score of ‘1’ signifies that more than 90% of species’ range overlaps with landmass shapefiles from GSHHG v2.3.7 (Wessel and Smith 2017) that are smaller than 2,000,000 km2 corresponding to the area of Greenland
Environment
- Mean_temperature: annual mean temperature (BIO1, degrees Celcius) from WorldClim v.2.1 (Fick and Hijmans 2017)
- Variation_in_Temperature: annual variation in temperature (BIO7) from WorldClim v.2.1 (Fick and Hijmans 2017)
Nest type
- BayesTraits_location: 4 categories of nest location: (1)'Open', (2)'Facultative Cavity', (3)'Obligate Cavity', (4)'Excavator'. Can be grouped further as open location (category (1)) vs. enclosed location (categories (2)-(4)). HBW, BNA, NBO, BWP, van der Hoek et al. (2017)
- BayesTraits_structure: 4 categories of nest structure: (1) 'Open', (2) 'Partial Dome', (3) 'Dome', (4) 'Dome and Tube'. Can be grouped further as open structure (category (1)) vs. enclosed structure (categories (2)-(4)). HBW, BNA, NBO, BWP, van der Hoek et al. (2017)
- BPMM_nest_type: 4 categories of nesting strategies included as a discrete explanatory variable in BPMMs (Bayesian Phylogenetic Mixed Models): (1) 'Open' - open nest location and structure, (2) 'Competitive Enclosed'- obligate cavity nesters, (3) 'Non-competitive Enclosed' - excavators and dome nesters (including species building a dome and tube), (4) 'Facultative Enclosed' - facultative cavity nesters and/or partial dome nesters
Sharing/Access information
Data was derived from the following sources:
- del Hoyo, J., A. Elliott, J. Sargatal, D. A. Christie, and G. Kirwan (2019). Handbook of the Birds of the World Alive. [Online.] Available at http://www.hbw.com.
- Jetz, W., G. H. Thomas, J. B. Joy, K. Hartmann, and A. O. Mooers (2012). The global diversity of birds in space and time. Nature 491:444–448.
- Tobias, J. A., Sheard, C., Pigot, A. L., Devenish, A. J. M., Yang, J., Sayol, F., Neate-Clegg, M. H. C., Alioravainen, N., Weeks, T. L., Barber, R. A., Walkden, P. A., et al. (2022). AVONET: morphological, ecological and geographical data for all birds. Ecology Letters: 25, 581–597.
- Cornell Lab of Ornithology (2019a). The Birds of North America (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA.
- Cornell Lab of Ornithology (2019b). Neotropical Birds Online (T. S. Schulenberg, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA.
- Cramp, S., C. M. Perrins, and K. E. L. Simmons (2008). BWPi 2.0.3: The Birds of the Western Palearctic Interactive - DVD ROM. OUP/BirdGuides Ltd.
- BirdLife International (2019). IUCN Red List for Birds. [Online.] Available at http://www.birdlife.org.
- Wessel, P., and W. H. F. Smith (2017). GSHHG - A Global Self-consistent, Hierarchical, High-resolution Geography Database. Version 2.3.7. [Online] Available at https://www.soest.hawaii.edu/pwessel/gshhg/.
- Fick, S. E., and R. J. Hijmans (2017). WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology 37:4302–4315.
- van der Hoek, Y., G. V. Gaona, and K. Martin (2017). The diversity, distribution and conservation status of the tree-cavity-nesting birds of the world. Diversity and Distributions 23:1120–1131.
Methods
The dataset was collected from literature sources.