Data from: Incorporating color into integrative taxonomy: analysis of the varied tit (Sittiparus varius) complex in East Asia
Data files
Feb 28, 2014 version files 1.28 MB
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S1 Morphological sample list.pdf
66.94 KB
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S2 Molecular sample list.pdf
69.29 KB
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S3 Toepad primers & sequencing conditions.pdf
81.68 KB
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S4 Morphometric plots.pdf
313.96 KB
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S5 Luminance plots.pdf
279.11 KB
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S6 Loci table.pdf
62.55 KB
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S7 Nuclear intron networks.pdf
205 KB
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VATI CS08352 Align Final.fas
19.15 KB
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VATI CS09385 Align Final.fas
15.88 KB
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VATI CS10179 Align Final.fas
31.79 KB
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VATI CS11887 Align Final.fas
9.51 KB
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VATI CS12884B Align Final.fas
18.87 KB
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VATI CS15349 Align Final.fas
18.61 KB
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VATI ND2 Align Final.fasta
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Abstract
Species designations are critically important scientific hypotheses that serve as the foundational units in a wide range of biological subdisciplines. A growing realization that some classes of data fail to delimit species under certain conditions has led to increasingly more integrative taxonomies, whereby species discovery and hypothesis testing are based on multiple kinds of data (e.g. morphological, molecular, behavioral, ecological, etc.). However, although most taxonomic descriptions have been based on morphology, some key morphological features, such as color, are rarely quantified and incorporated into integrative taxonomic studies. In this paper, we applied a new method of ultraviolet digital photography to measure plumage variation in a color-variable avian species complex, the varied tit (Sittiparus varius). Plumage measurements corroborated species limits defined by morphometric, mitochondrial DNA, and nuclear DNA disjunctions and provided the only evidence for recognizing two recently evolved species. Importantly, color quantification also provided a justification for lumping putative taxa with no evidence of evolutionary independence. Our revised taxonomy thus refines conservation units for listing and management and clarifies the primary units for evolutionary studies. Species tree analyses, which applied the newly delimited species as operational taxonomic units, revealed a robust phylogenetic hypothesis for the group that establishes a foundation for future biogeographic analyses. Our study demonstrates how digital photography can be used to incorporate color character variation into integrative taxonomies, which should lead to more informed, more rigorous, and more accurate assessments of biodiversity.