Data from: Ecological trait divergence over evolutionary time underlies the origin and maintenance of tropical spider diversity
Data files
Mar 17, 2023 version files 1.43 MB
-
20221101finallox.nex
1.24 MB
-
morphology_psilodercidae0831.nex
189.82 KB
-
README.md
1.63 KB
Nov 06, 2024 version files 1.33 MB
-
iqtree.zip
133.98 KB
-
molecular_data.zip
1.19 MB
-
README.md
1.26 KB
Abstract
Relative to its size, tropical Asia is likely to be the richest region in terms of biodiversity. However, the factors of species diversity formation and maintenance in Southeast (SE) Asia and neighboring regions remain poorly understood. Here we infer the evolutionary relationships within psilodercid spiders by incorporating fossil information into a robust, unprecedentedly complete species-level phylogeny of 202 extant species to explore potential abiotic drivers and ecological features underlying their stable diversification history. The combination of extant and extinct historical biogeographic data indicates that in situ speciation is the predominant form of diversification in tropical Asia but diverse Cretaceous psilodercids in Myanmar ambers were replaced by other biogeographical lineages during the northward movements of the Burma Terrane. Furthermore, our diversification analyses show no diversification rate changes through time and across geographic space in this family, but the genus Althepus displays an accelerated rate of species diversification driven by the remarkable expansion of leg length. Trait evolution analysis shows that ecological trait divergence contributes to the diversification and accumulation of tropical spiders by facilitating species coexistence. These findings provide empirical evidence that the ecological trait divergence over evolutionary time scales is key to forming species diversity hotspots in SE Asia. Thus, this study integrating molecular evidence and paleontological interpretation provides a new framework for understanding the evolution of tropical species diversity.
README
DNA alignments (iqtree.zip): the dataset contains 202 extant psilodercid species sequenced with the previous seven classical markers (Table S2)
20221101final5c_need.phy
20221101final16s_need.phy
20221101final18s_need.phy
20221101final28s_need.phy
20221101finalco1_need.phy
20221101finalh3_need.phy
20221101finalwnt_need.phy
morphological alignments (iqtree.zip)
morph1101.phy
concatenated alignment: alignments of the molecular data; the dataset contains morphological and molecular data (Table S1 and S2)
20221101finallox.phy (molecular_data.zip)
20221101finallox.nex (molecular_data.zip)
psi_TE0103.nex (iqtree.zip)
phylogenetic trees
20221101finallox.nex.con.tre (molecular_data.zip)
RAxML_bipartitions.20221101finallox.tre (molecular_data.zip)
psi_TE0103.nex.contree (iqtree.zip)
Divergence Time Analyses and Marginal likelihood estimation using path sampling and stepping-stone sampling in BEAST 1.10.4.
20221101finallox3_bd1.xml (molecular_data.zip)
20221101finallox3_y1.xml (molecular_data.zip)
20221101finallox_y3_3.xml (molecular_data.zip)
dated trees
20221101finallox3_yall.trees.out.tre (molecular_data.zip)
species distribution
psilodercinae_removeroot_fossil_burma_9 (molecular_data.zip)
R scripts and codes
scripts (scripts.zip)