Suspended sections within downed dead wood are drier, have altered decomposer communities, and slower decomposition
Data files
Sep 08, 2023 version files 48.63 MB
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1_organize_files_45samples_20230825.R
15.78 KB
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2_respiration_analysis_trimmedata_plumbers_20230825.R
34.48 KB
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3_wood_density_moisture_analyses_20230602_EMG_AMBB.R
25.87 KB
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50ha_ws_previsual_2022-5-18_bigger_equal_10dbh_20230824.R
30.91 KB
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DATA_Dictionary_Barrera_etal_2023_ReadMe.xlsx
11.33 KB
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diversity_analysis_20230405.R
108.08 KB
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Fungal_OTUtable.biom
19.56 MB
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mass_loss_20230825.R
5.95 KB
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mass_loss.csv
5.08 KB
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microbes_input_20230401.R
7.24 KB
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otu_table_mc2_w_tax_no_pynast_failures.biom
28.77 MB
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README.md
1.73 KB
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README.rtf
38.48 KB
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respiration_model_results.csv
4.56 KB
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tri2tu_all_remaining.csv
5.51 KB
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tri2tu_by_years_since_death.csv
733 B
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ws_50ha_susp_decomp_1to5.csv
9.29 KB
Nov 23, 2024 version files 48.88 MB
Abstract
The decomposition of dead wood plays a key role in forest carbon emissions. Most pieces of downed dead wood are partially suspended above the forest floor, but how this suspension affects decomposition rates is typically ignored and remains largely unexplored. Here we combine field observations and experimental manipulations to explore how partial suspension of downed wood (i.e., wood debris in contact with the ground) influences decomposer communities and patterns of decomposition in a lowland tropical forest. Experimental manipulations of wood sticks showed that small-scale suspension above the forest floor (ca. 5 cm) slowed decomposition and altered microbial community assembly, regardless of whether the suspended section was connected to a piece of downed wood. Across a 41-year chronosequence of dead trees, the average percent of wood volume suspended above the forest floor decreased during the initial 10 years post-death, but this trend reversed after 10 years, with the oldest logs being the forest floor had less moisture, fewer macrofungi, and more photosynthetic growth (e.g., moss, algae, etc.) than downed sections of the same bole. Surprisingly, wood density, termite presence, and mass-specific respiration did not differ with ground contact. Combined, these data suggest that suspension within downed wood reduces moisture content, influences decomposer community assembly, and contributes to the strong variability in decomposition rates. The strong effect of partial suspension within downed wood pieces heightens concerns about the accuracy and applicability of experiments and surveys focused on down dead wood, which are the foundation of our understanding of wood decomposition and associated carbon losses most suspended. Among downed woody pieces sampled in situ, sections suspended above the forest floor had less moisture, fewer macrofungi, and more photosynthetic growth (e.g., moss, algae, etc.) than downed sections of the same bole. Surprisingly, wood density, termite presence, and mass-specific respiration did not differ with ground contact. Combined, these data suggest that suspension within downed wood reduces moisture content, influences decomposer community assembly, and contributes to the strong variability in decomposition rates.
README: Suspended sections within downed dead wood are drier, have altered decomposer communities, and slower decomposition
ReadMe file for data submitted as part of Barrera et al. 2023 publication entitled 'Suspended sections within downed dead wood are drier, have altered decomposer communities, and slower decomposition' in Ecosystems Journal
Description of the data and file structure
File Name | Description |
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1_Fungal_OTUtable.biom | Fungal OTU data table |
1_otu_table_mc2_w_tax_no_pynast_failures.biom | Fungal OTU table cleaned |
diversity_analysis_20230405.R | R code for analyzing microbial diversity |
respiration_model_results.csv | Table of respiration model results |
tri2tu_all_remaining.csv | Woody data on remaining trees |
tri2tu_by_years_since_death.csv | Woody data on years since death |
1_diversity_analysis_20230405.R | R code for analyzing microbial diversity |
1_mass_loss.csv | Decomposition/mass loss data |
1_mass_loss_20230825.R | R code for analyzing mass loss |
1_microbes_input_20230401.R | R code for analyzing microbial communities |
1_2_respiration_analysis_trimmedata_plumbers_20230825.R | R code for respiration analyses |
1_connected_elevated_experiment.pwk | Primer data file for community analyses |
1_3_wood_density_moisture_analyses_20230602_EMG_AMBB.R | R code for analyzing wood density and moisture |
1_elevation_exp_avg_20230926_sec.csv | Elevational data for average decomposition |
1_metadata_20230926_sec.csv | Metadata file |
1_50ha_ws_previsual_2022-5-18_bigger_equal_10dbh_20230824.R | R code for analyzing trees larger than 10dbh |
ws_50ha_nona_elev1.csv | Cleaned elevational data for 50 ha plot |
ws_50ha_nona_tri2tu_decomp_1to5.csv | 50-hectare plot data for decomposition |
README.rtf | Readme file containing variable definitions |
DATA_Dictionary_Barrera_etal_2023_ReadMe.xlsx | Dictionary describing the file components |
Change Log:
Nov 2024: updated some files to remove NAs and match the clean files we used in the manuscript
Sharing/Access information
NA
Code/Software
Included and described above