Preventative medicine? Examining prophylactic effects of a sunflower pollen diet in Bombus impatiens
Data files
Apr 30, 2024 version files 29.02 KB
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MasterDataSunflowerProphylaxis_CL_ECM_CountData.csv
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MasterSunflowerConsumption_CL_Final.csv
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MasterSunflowerEvaporation_CL_Final.csv
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README.md
Abstract
The widespread decline of pollinator populations is of concern for both natural and agricultural ecosystems. Pathogens have been identified as a major contributor to the decline of some bee species, making understanding host-pathogen dynamics a crucial area of research. Sunflower pollen (Helianthus annuus) dramatically and consistently reduces infection by a prevalent gut pathogen, Crithidia bombi, in the common eastern bumble bee (Bombus impatiens), when consumed by bees post-infection, but we do not know if sunflower can confer protection when consumed before exposure. We asked whether feeding bumble bees sunflower pollen diets before pathogen exposure decreases Crithidia infection compared to buckwheat pollen (Fagopyrum esculentum). Buckwheat pollen was used as a comparison since it has a similar protein concentration as sunflower pollen, but results in high Crithidia counts when consumed post-infection. Bumble bees were fed sunflower or buckwheat pollen for seven days, inoculated with Crithidia, and then fed a wildflower pollen control diet for seven more days before assessing infection. We found that consuming a sunflower pollen diet before inoculation did not reduce Crithidia cell counts compared to buckwheat pollen. Further, bumble bee survival and consumption of sucrose solution and pollen did not differ between these diets. The results show no evidence of sunflower pollen providing prophylactic resistance against Crithidia bombi infection, indicating that the timing at which sunflower pollen is consumed relative to exposure has important consequences for infection.
README: Preventative medicine? Examining prophylactic effects of a sunflower pollen diet in Bombus impatiens
https://doi.org/10.5061/dryad.kwh70rzcm
This file describes the archived R script and CSV files associated with this manuscript.
Code/Software: R script: ProphylacticScript-CL_Final.R
All the analyses and graphs in the manuscript are produced by this R script, which includes a "set working directory" command within the code for each question, which you will need to modify.
The script is written so that it works if all CSV data files are put into one folder, and the working directory is set to that folder. This has only been tested under Windows but should also be true in macOS and Linux.
Description of the data and file structure
These CSV files were extracted from original data files in XLS or XLSX format. Missing data are indicated with 'NA'.
The CSV files are included in the archive so that the R script will run "out of the box" to replicate analyses in the paper.
All dates are in month/day/year format.
Files:
MasterDataSunflowerProphylaxis_CL_ECM_CountData.csv
Sample_ ID: Bee individual identification number
Treatment: Diet treatment pollen the bee was given (either sunflower or buckwheat)
Colony_ID: Source colony name
Inoc_Date: Date the bee was inoculated with Crithidia
Dissect_Date: Date the bee was dissected
Count: Crithidia cell count in 0.02 uL bee gut solution (hindgut macerated in 300 uL Ringer's solution)
Death: 1 = died before dissection, 0 = did not die before dissection
Death_Date: If the bee died before dissection, the date of death
Survival_days: Days survived for bees who died before dissection
wing_cm: Marginal cell length in cm of the right wing
wing_mm: Marginal cell length in mm of the right wing
MasterSunflowerConsumption_CL_Final.csv
ID: Bee identification number
treatment: Diet treatment pollen the bee was given (SF = sunflower, BW = buckwheat)
pol_bef_date: Date that treatment pollen weight was measured before the bee was allowed to consume treatment pollen
pol_bef_time: Time that treatment pollen weight was measured before the bee was allowed to consume treatment pollen
pol_bef_weight_g: Weight in grams of treatment pollen before the bee was allowed to consume treatment pollen
pol_aft_date: Date that treatment pollen weight was measured after the bee was allowed to consume treatment pollen
pol_aft_time: The time that treatment pollen weight was measured after the bee was allowed to consume treatment pollen
pol_aft_weight_g: Weight in grams of treatment pollen after the bee was allowed to consume treatment pollen
suc_bef_date: Date that sucrose weight was measured before the bee was allowed to consume treatment pollen
suc_bef_time: Time that sucrose weight was measured before the bee was allowed to consume treatment pollen
suc_bef_weight_g: Weight in grams of sucrose before the bee was allowed to consume treatment pollen
suc_aft_date: Date that sucrose weight was measured bee was allowed to consume treatment pollen
suc_aft_Time: Time that sucrose weight was measured and the bee was allowed to consume treatment pollen
suc_aft_weight_g: Weight in grams of sucrose after the bee was allowed to consume treatment pollen
Net_pollen: Change in pollen weight between pol_bef_weight_g and pol_aft_weight_g
Net_sucrose: Change in sucrose weight between suc_bef_weight_g and suc_aft_weight_g
MasterSunflowerEvaporation_CL_Final.csv
ID: Evaporative control identification. C indicates evaporation control, the number differentiates between evaporation controls
treatment: Diet treatment pollen used in the evaporation control (SF = sunflower, BW = buckwheat)
pol_bef_date: Date that treatment pollen weight was measured before the evaporation control period
pol_bef_time: Time that treatment pollen weight was measured before the evaporation control period
pol_bef_weight_g: Weight in grams of treatment pollen before the evaporation control period
pol_aft_date: Date that treatment pollen weight was measured after the evaporation control period
pol_aft_time: The time that treatment pollen weight was measured after the evaporation control period
pol_aft_weight_g: Weight in grams of treatment pollen after the evaporation control period
suc_bef_date: Date that sucrose weight was measured before the evaporation control period
suc_bef_time: Time that sucrose weight was measured before the evaporation control period
suc_bef_weight_g: Weight in grams of sucrose before the evaporation control period
suc_aft_date: Date that sucrose weight was measured after the evaporation control period
suc_aft_Time: The time that sucrose weight was measured after the evaporation control period
suc_aft_weight_g: Weight in grams of sucrose after the evaporation control period
Net_pollen: Change in pollen weight between pol_bef_weight_g and pol_aft_weight_g
Net_sucrose: Change in sucrose weight between suc_bef_weight_g and suc_aft_weight_g
Methods
These data are from an experimental manipulative study performed in a lab setting to ask whether exposure to specific diets provides prophylactic protection against infection by a gut pathogen. Commercial bumble bees (Bombus impatiens) were assigned to be fed sunflower (Helianthus annuus) or buckwheat (Fagopyrum esculentum) pollen for one week and were then inoculated with a standard dose of Crithidia bombi, a gut pathogen. After inoculation, all bees were fed a standard wildflower pollen diet for one more week and then assessed to determine infection intensity (C. bombi cells per 0.02 uL).