Skip to main content
Dryad

Data from: Earlier springs increase goose breeding propensity and nesting success at Arctic but not at temperature latitudes

Cite this dataset

Boom, Michiel et al. (2023). Data from: Earlier springs increase goose breeding propensity and nesting success at Arctic but not at temperature latitudes [Dataset]. Dryad. https://doi.org/10.5061/dryad.m63xsj47x

Abstract

1. Intermittent breeding is an important tactic in long-lived species that trade off survival and reproduction to maximize lifetime reproductive success. When breeding conditions are unfavourable, individuals are expected to skip reproduction to ensure their own survival. 
2. Breeding propensity (i.e. the probability for a mature female to breed in a given year) is an essential parameter in determining reproductive output and population dynamics, but is not often studied in birds because it is difficult to obtain unbiased estimates. Breeding conditions are especially variable at high latitudes, potentially resulting in a large effect on breeding propensity of Arctic-breeding migratory birds, such as geese.
3. With a novel approach, we used GPS-tracking data to determine nest locations, breeding propensity and nesting success of barnacle geese, and studied how these varied with breeding latitude and timing of arrival on the breeding grounds relative to local onset of spring.
4. Onset of spring at the breeding grounds was a better predictor of breeding propensity and nesting success than relative timing of arrival. At Arctic latitudes (> 66°), breeding propensity decreased from 0.89 (95% CI: 0.65-0.97) in early springs to 0.22 (95% CI: 0.06-0.55) in late springs, while at temperate latitudes it varied between 0.75 (95% CI: 0.38-0.93) and 0.89 (95% CI:  0.41-0.99) regardless of spring phenology. Nesting success followed a similar pattern, and was lower in later springs at Arctic latitudes, but not at temperate latitudes.  In early springs, a larger proportion of geese started breeding despite arriving late relative to the onset of spring, possibly because the early spring enabled them to use local resources to fuel egg laying and incubation.
5. While earlier springs due to climate warming are considered to have mostly negative repercussions on reproductive success through phenological mismatches, our results suggest that these effects may partly be offset by higher breeding propensity and nesting success.

README: Data from: Earlier springs increase goose breeding propensity and nesting success at Arctic but not at temperature latitudes

https://doi.org/10.5061/dryad.m63xsj47x

This dataset contains nest locations of 96 female Barnacle geese (some tracked over multiple years) with various life history tactics, ranging from long-distance migrants breeding in the Arctic (above 66°N) to short-distance migrants and residents in the temperate zone (between 51°N and 66°N). Nest locations were derived from tracking data between 2008 and 2020. For birds that did not breed, the potential nest location (location where the bird could have bred) is determined. Birds were caught and equipped with GPS-transmitters on the breeding grounds in the Arctic in 2014 and 2018, on breeding grounds in the temperate zone (residents) in 2015-2018, and on the wintering grounds in the North of the Netherlands and North Germany in 2016-2020. Additionally, we retrieved tracking data from Kölzsch et al. (2015) gathered in 2008-2010, which is published on movebank.org (van der Jeugd et al., 2014).

The majority of the raw tracking data is stored on Movebank (see links below). Raw tracking data not stored in Movebank is provided with this dataset in separate files.

Kölzsch, A.,Bauer, S.,de Boer, R.,Griffin, L.,Cabot, D.,Exo, K.-M.,van der Jeugd, H.P. & Nolet, B.A. (2015) ‘Forecasting spring from afar? Timing of migration and predictability of phenology along different migration routes of an avian herbivore.’, The Journal of animal ecology. Edited by S. Bearhop, 84(1), pp. 272–83. doi: 10.1111/1365-2656.12281.

van der Jeugd, H.P.,Oosterbeek, K.,Ens, B.J.,Shamoun-Baranes, J. & Exo, K. (2014) ‘Data from: Forecasting spring from afar? Timing of migration and predictability of phenology along different migration routes of an avian herbivore [Barents Sea data].’, Movebank Data Repository. doi: 10.5441/001/1.ps244r11

Description of the data and file structure

This dataset consists of 4 separate files:
1. NestLocationData
2. RawTrackingData_GPSACC
3. RawTrackingData_GPSonly
4. ID_list

Data file 1 (NestLocationData) contains the nest location data, including the following columns:

Bird_ID = a unique identifier for each individual bird.
Year = the year in which the bird was tracked (some birds are tracked for multiple years).
Track_ID = A unique identifier for each track on which the nest location is based, consists of a combination of Bird_ID and Year.
attend75.duration = Number of days on which more than 75% of the GPS-locations occurred within 50 m of the nest location.
Method = Describes the method which was used to try to determine the nest location (GPS.ACC or GPS.only represent a combination of GPS and Acceleration data or GPS data only respectively).
Breeding = Binary variable indicating whether a bird attempted to breed (1) or not (0), based on attend75.duration >3
Nesting_success = Binary variable indicating whether the nest of the bird hatched (1) or not (0), based on attend75.duration >25
lat = Latitude of the (potential) nest location
lon = longitude of the (potential) nest location
GDD_jerk (DOY) = Julian day on which the acceleration in spring temperature was highest in the year of tracking. Measure of onset of spring.
arrival_date = date at which a tracked bird was within 35 km of the nesting location for the first time
Mean_GDD_jerk = mean Julian day on which the acceleration in spring temperature was highest over the period (2008-2020)
sd_jerk = Standard deviation of the Mean_GDD_jerk
GDD_jerk_stdz = Standardized value of GDD_jerk (DOY), obtained by: (GDD_jerk (DOY) - Mean_GDD_jerk) / sd_jerk
Tracking data source = Source of the raw tracking data from which the breeding location is derived (either stored on Movebank or in this dataset)

Data file 2 (RawTrackingData_GPSACC) contains the raw tracking used in this study (April - July) for which data is not available on Movebank. This file only contains the tracking data of birds for which GPS and Accelerometer data were available.
The following columns are included:

Device.ID = Unique identifier for each bird
latitude = latitude of the GPS position (WGS 84)
longitude = longitude of the GPS position (WGS 84)
dtime = Date and time of the GPS fix (UTC)
trackID = Unique identifier for each track (combination of Device.ID and year of tracking)
VeDBA.match = Vectorial Dynamic Body Acceleration measurement (VeDBA) taken within 10 minutes of the GPS fix.
type = Type of transmitter used

Data file 3 (RawTrackingData_GPSonly) contains the raw tracking used in this study (April- July) for which data is not available on Movebank. This file only contains the tracking data of birds for which only GPS data was available.
The following columns are included:

Device.ID = Unique identifier for each bird
latitude = latitude of the GPS position (WGS 84)
longitude = longitude of the GPS position (WGS 84)
dtime = Date and time of the GPS fix (UTC)
trackID = Unique identifier for each track (combination of Device.ID and year of tracking)
type = Type of transmitter used

Data file 4 (ID_list) contains a list of the IDs (based on Device.ID) and years of tracking which are included in data file 1. Additionally, the source of the raw tracking data is provided.

Bird.ID = Unique identifier for each bird
Year = the year in which the bird was tracked (some birds are tracked for multiple years).
Tracking data source = Source of the raw tracking data from which the breeding location is derived (either stored on Movebank or in this dataset)

Sharing/Access information

The majority of the raw tracking data is stored on Movebank (see links below). Raw tracking data not stored in Movebank is provided with this dataset in separate files.

Movebank Datasets:
Barnacle goose from Netherlands to Russia
Link: https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study1114583459
Contact person: Nelleke Buitendijk
Principal investigator: Bart Nolet

Disturbance of BG by IFV and IWWR
Link: https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study137654491
Contact person: Sander Moonen
Principal investigator: Sander Moonen

Data from: Forecasting spring from afar? Timing of migration and predictability of phenology along different migration routes of an avian herbivore [Barents Sea data]
Link: https://www.movebank.org/cms/webapp?gwt_fragment=page=studies,path=study29799425
Doi: https://www.doi.org/10.5441/001/1.ps244r11
Contact person: Michael Exo      
Principal investigator: Michael Exo

Methods

We collated tracking data (GPS and accelerometer when available) of 96 adult female barnacle geese. This dataset includes geese with various life history tactics, ranging from long-distance migrants breeding in the Arctic (above 66°N) to short-distance migrants and residents in the temperate zone (between 51°N and 66°N). Birds were caught and equipped with GPS-transmitters on the breeding grounds in the Arctic in 2014 and 2018 (N=6; 68°34' N, 52°18' E), on breeding grounds in the temperate zone (residents) in 2015-2018 (N=7; 51°47' N, 4°08' E), and on the wintering grounds in the North of the Netherlands and North Germany in 2016-2020 (N=72). Additionally we retrieved tracking data from Kölzsch et al. (2015) gathered in 2008-2010 (N=11), which is published on movebank.org (van der Jeugd et al., 2014).  In winter, geese were caught using cannon-nets, while in summer geese were captured either on the nest using clap-nets or by rounding geese up in a catching pen during the wing moult when geese are flightless. Throughout the study period, geese were equipped with different transmitter types: Milsar (24 g, GSMRadioTag, Milsar Technologies S.R.L.; N=2), UvABiTS (19 g, (Bouten et al., 2013); N=11), Madebytheo (27 g, N=24), Ornitela (25 g; N=48) and solar Argos/GPS PTTs (30 g, N=11, Kölzsch et al., 2015). Transmitters were attached using a 16-gram Teflon harness (Lameris et al., 2017), with total mass of transmitter and harness being < 3% of the average body mass of a female barnacle goose. The GPS-tags used by Kölzsch et al. (2015) were attached using a comparable nylon harness. 

We selected data from the period between April 1 and July 31, during which barnacle geese of different breeding populations initiate nesting. IN case of high frequence records, we sub-sampled data to 1 GPS-fix every 15 min to make transmitters with different sampling regimes comparable. All tracks had tracking information for at least 112 days within the 122-day period. ACC data was not available for all tracks, due to differences in transmitter type as well as settings used.  When ACC data were available (Ornitela, UvaBiTS; 78 tracks), we defined a potential nest location as the median coordinates of GPS-fixes at which the goose was motionless, on days when the goose was mostly motionless (see Schreven et al., 2021). We used ACC measurements which were taken simultaneous with GPS positions, or if ACC was not measured simultaneously, we took the nearest ACC-measurement with maximum 10 min time difference. We used VeDBA as measure of activity (Dokter et al., 2018). To deal with the differences in accelerometer types as well as burst length and burst frequency, the threshold in VeDBA below which a goose was categorized as motionless was set per transmitter type, at: 24 (Milsar), 16.5 (Ornitela) and 26.5 (UvABiTS) following methods by Boom et al. (2023). For tracks where ACC-measurements were not available (78 out of 154 tracks), we used the GPS-only method (see Schreven et al., 2021, who showed that this method worked well in comparison with the GPS and ACC based nest detection), defining a potential nest location as the median coordinates of GPS-fixes on days when the standard deviation in latitude was below 50 m. For each potential nest location, we calculated the time spent per day within 50 m of the nest. These locations were classified as nest when at least 4 subsequent days had >75% attendance within 50 m, allowing for differentiation between non-breeding and early nest failure (after first 4 days). Tracks of geese for which no nesting location could be determined (because no nest location was assigned which the goose attended for at least 4 days) were considered non-breeding tracks (N=81).

To retrieve information on location (latitude), timing of arrival and spring phenology for non-breeding bird tracks (N=81), we needed to estimate the most likely potential nest location of non-breeding birds (hereafter referred to as “potential nest location”). To determine the potential nest locations, we calculated for each non-breeding bird the similarity between its track and the tracks of breeding birds (i.e. those with an assigned nest, N = 73). Tracks were subset to the period April-June and mean locations per day were taken. We used Dynamic Time Warping (DTW), using the R package “dtw” (Giorgino, 2009) to calculate trajectory similarities (Janoska, 2014). The potential nest location of non-breeding birds was determined as the nest location of the most similar breeding bird (track of the bird with the lowest “distance” as determined by the DTW-analysis).

For every track, arrival date was determined as the first day a goose was within 35 km of its assigned nest location (for breeders) or potential nest location (for non-breeders). Not all non-breeding birds came within 35 km of the potential nest location. We concluded that for these birds determination of a potential nest location was not reliable and therefore these birds were excluded from the  statistical analysis.

We derived information on the local onset of spring from temperature data for all years between 2008-2020. We used the R package RNCEP (Kemp et al., 2012) to retrieve temperature data from January 1 till September 30 for all assigned (breeders) and potential (non-breeders) nest locations. Air temperature (2 m above the surface) was retrieved from a 2.5°x2.5° gridded dataset with 6 h temporal resolution, and interpolated using planar interpolation. We calculated the Growing Degree Days (GDD) for every nest location. Due to the wide latitudinal range in our study, the threshold used to determine the GDD was latitude-dependent, following a linear relationship (Tthreshold = -0.25 x Latitude + 13; see van Wijk et al. 2012). Subsequently, we fitted a sigmoid curve, and derived the GDD jerk (third derivative) following van Wijk et al. (2012). By solving the derivative of the GDD jerk to zero, we determined the date of peak spring temperature acceleration. To correct for variation in timing of onset of spring with latitude, local onset of spring was standardized.

 

 

 

Boom, M. P., Lameris, T. K., Schreven, K. H., Buitendijk, N. H., Moonen, S., de Vries, P. P., Zaynagutdinova, E., Nolet, B.A., van der Jeugd, H.P. & Eichhorn, G. (2023). ‘Year-round activity levels reveal diurnal foraging constraints in the annual cycle of migratory and non-migratory barnacle geese’. Oecologia, pp. 287–298.  doi: 10.1007/s00442-023-05386-x.

Bouten, W.,Baaij, E.W.,Shamoun-Baranes, J. & Camphuysen, K.C.J. (2013) ‘A flexible GPS tracking system for studying bird behaviour at multiple scales’, Journal of Ornithology, 154(2), pp. 571–580. doi: 10.1007/s10336-012-0908-1

Giorgino, T. (2009) ‘Computing and visualizing dynamic time warping alignments in R: The dtw package’, Journal of Statistical Software, 31(7), pp. 1–24. doi: 10.18637/jss.v031.i07.

Janoska, Z. (2014) Trajectory similarity calculation using Dynamic Time Warping. https://rpubs.com/janoskaz/10351. Accesed on 2022-01-24

Kemp, M.U.,Emiel van Loon, E.,Shamoun-Baranes, J. & Bouten, W. (2012) ‘RNCEP: Global weather and climate data at your fingertips’, Methods in Ecology and Evolution, 3(1), pp. 65–70. doi: 10.1111/j.2041-210X.2011.00138.x.

Kölzsch, A.,Bauer, S.,de Boer, R.,Griffin, L.,Cabot, D.,Exo, K.-M.,van der Jeugd, H.P. & Nolet, B.A. (2015) ‘Forecasting spring from afar? Timing of migration and predictability of phenology along different migration routes of an avian herbivore.’, The Journal of animal ecology. Edited by S. Bearhop, 84(1), pp. 272–83. doi: 10.1111/1365-2656.12281.

Lameris, T.K.,Kölzsch, A.,Dokter, A.M.,Nolet, B.A. & Müskens, G.J.D.M. (2017) ‘A novel harness for attaching tracking devices to migratory geese’, Goose Bulletin, (22), pp. 25–30.

Schreven, K.H.T.,Stolz, C.,Madsen, J. & Nolet, B.A. (2021) ‘Nesting attempts and success of Arctic-breeding geese can be derived with high precision from accelerometry and GPS-tracking’, Animal Biotelemetry, 9(1), pp. 1–13. doi: 10.1186/s40317-021-00249-9.

van der Jeugd, H.P.,Oosterbeek, K.,Ens, B.J.,Shamoun-Baranes, J. & Exo, K. (2014) ‘Data from: Forecasting spring from afar? Timing of migration and predictability of phenology along different migration routes of an avian herbivore [Barents Sea data].’, Movebank Data Repository. doi: 10.5441/001/1.ps244r11

van Wijk, R.E.,Kölzsch, A.,Kruckenberg, H.,Ebbinge, B.S.,Müskens, G.J.D.M. & Nolet, B. a. (2012) ‘Individually tracked geese follow peaks of temperature acceleration during spring migration’, Oikos, 121(5), pp. 655–664. doi: 10.1111/j.1600-0706.2011.20083.x.

Funding

Dutch Research Council, Award: ALWPP.2016.030

German Ministry of Food, Agriculture and Consumer Protection, Award: 406-04032/1-1502/1

Province of Fryslân, NL, Award: 01443719

KNAW Ecology Fund

Van der Hucht de Beukelaar Foundation