Data from: PER-SIMPER - a new tool for inferring community assembly processes from taxon occurrences
Data files
Mar 20, 2019 version files 98.68 KB
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Help notes PER-SIMPER.docx
28.87 KB
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PERSIMPER.R
12.82 KB
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PerSIMPERgroups.txt
380 B
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PerSIMPERmatrix.txt
56.60 KB
Jul 18, 2019 version files 102 KB
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Help notes PER-SIMPER.docx
28.87 KB
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PERSIMPER.R
12.82 KB
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PerSIMPERgroups.txt
732 B
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PerSIMPERmatrix.txt
59.58 KB
Sep 28, 2022 version files 100.24 KB
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PERSIMPER.R
12.82 KB
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PerSIMPERgroups.txt
732 B
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PerSIMPERmatrix.txt
59.58 KB
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README_notes_PER-SIMPER.docx
27.11 KB
Abstract
Aim: Understanding how ecosystem functioning and evolution shape taxonomic as- semblages is a lively debate basically involving two major opposite views: the niche- and dispersal-assembly hypotheses. Here, we introduce a new method allowing for the identification of the first-order process of assembly underlying a set of taxonomic assemblages.
Methods: Building on Clarke’s SIMPER (for “similarity percentage”) analysis of a taxon/ locality occurrence data set, we develop a permutation-based algorithm named PER- SIMPER, allowing for the identification of the first-order process—either niche- or dispersal-assembly—that drives species distribution within two or more groups of assemblages. We demonstrate the reliability and robustness of the method through cellular automaton-like simulations generating niche-assembled and/or dispersal-as- sembled species occurrence data sets. Sensitivity analysis further allows evaluation of its accuracy and robustness to sampling effort, including reduced numbers of sampled localities and/or species.
Main conclusions: Niche- and/or dispersal-assembled communities generate very dif- ferent SIMPER profiles, which, in turn, allow for the accurate and consistent identifica- tion of the first-order process of assembly operating within two or more groups of species assemblages through a threefold randomization procedure named PER-SIMPER. The PER-SIMPER method appears robust to varying sampling efforts that may affect the number of sampled localities and/or species, especially when one of the two processes of assembly dominates the other. The PER-SIMPER analysis can be achieved on any empirical occurrence data set using a dedicated R function available as Supporting Information.