Bacteria use a variety of stress-sensing systems to sense and respond to diverse stressors and to ensure their survival under adverse conditions. The gram-positive bacterium Bacillus subtilis responds to energy stress (ATP depletion) and to environmental stressors using two distinct stress-sensing pathways that converge on the alternative sigma factor σB to provoke a general stress response. Past efforts to study the σB stress response in bulk culture and on agarose pads were unable to visualize the responses of individual cells under tightly controlled conditions for extended periods of time. Here we use a microfluidics-based strategy to discern the basic features of σB activation in single cells in response to energy and environmental stress, both immediately upon stressor exposure and for tens of generations thereafter. Upon energy stress at various levels of stressor, cells exhibited fast, transient, and amplitude-modulated responses but not frequency modulation as previously reported. Upon environmental stress, which is mediated by the stressosome complex, wild-type cells primarily exhibited a transient and amplitude-modulated response. However, mutant cells producing only one of the four paralogous RsbR stressosome proteins showed striking and previously unseen differences. Whereas RsbRA-only cells mimicked the wild type, RsbRC-only cells displayed a slower but sustained overall response composed of repeated activation events in single cells.
1_20160505_WT_40CCCP_temp
Response of wild-type cells to the onset of 40 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 1.
1_20160505_WT_40CCCP.tar
2_20160512_WT_25CCCP
Response of wild-type cells to the onset of 25 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 2.
3_20160527_WT_55CCCP_temp
Response of wild-type cells to the onset of 55 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 3.
3_20160527_WT_55CCCP.tar
4_20160602_WT_DMSO_temp
Response of wild-type cells to DMSO vehicle. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 4.
4_20160602_WT_DMSO.tar
5_20160608_del_rsbP_55CCCP_temp
Response of ∆rsbP cells to the onset of 55 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 5.
5_20160608_del_rsbP_55CCCP.tar
6_20170612_WT_60MPA_temp
Response of wild-type cells to the onset of 60 μg/ml mycophenolic acid. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 6.
6_20170612_WT_60MPA.tar
7_20161004_WT_1EtOH_temp
Response of wild-type cells to the onset of 1% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 7.
7_20161004_WT_1EtOH.tar
8_20161012_WT_2EtOH_temp
Response of wild-type cells to the onset of 2% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 8.
8_20161012_WT_2EtOH.tar
9_20170309_DU_2EtOH_temp
Response of ∆rsbU cells to the onset of 2% ethanol. Representative MTC1920 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 9.
9_20170309_DU_2EtOH.tar
10_20161006_WT_4EtOH_temp
Response of wild-type cells to the onset of 4% ethanol. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 10.
10_20161006_WT_4EtOH.tar
11_20161020_RA_2EtOH_temp
Response of RsbRA-only cells to the onset of 2% ethanol. Representative MTC1761 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 11.
11_20161020_RA_2EtOH.tar
12_20160819_RC_2EtOH_temp
Response of RsbRC-only cells to the onset of 2% ethanol. Representative MTC1765 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 12.
12_20160819_RC_2EtOH.tar
13_20170104_RB_2EtOH_temp
Response of RsbRB-only cells to the onset of 2% ethanol. Representative MTC1763 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 13.
13_20170104_RB_2EtOH.tar
14_20161117_RD_2EtOH_temp
Response of RsbRD-only cells to the onset of 2% ethanol. Representative MTC1767 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 14.
14_20161117_RD_2EtOH.tar
15_20161026_RA_1EtOH_temp
Response of RsbRA-only cells to the onset of 1% ethanol. Representative MTC1761 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 15.
15_20161026_RA_1EtOH.tar
16_20160921_RC_1EtOH_temp
Response of RsbRC-only cells to the onset of 1% ethanol. Representative MTC1765 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 16.
16_20160921_RC_1EtOH.tar
17_20160915_RC_4EtOH_temp
Response of RsbRC-only cells to the onset of 4% ethanol. Representative MTC1765 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 17.
17_20160915_RC_4EtOH.tar
18_20161017_RA_4EtOH_temp
Response of RsbRA-only cells to the onset of 4% ethanol. Representative MTC1761 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 18.
18_20161017_RA_4EtOH.tar
19_20160822_DUP_LB_temp
Response of ∆rsbP ∆rsbU cells. Representative MTC1930 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. The cells are kept in LB with no medium switch to assess whether there is any σB activation in the absence of both known activating phosphatases. This experiment corresponds to Figure S10.
19_20160822_DUP_LB.tar