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Data from: probing variation in reaction norms in wild populations: the importance of reliable environmental proxies

Cite this dataset

Ramakers, Jip J. C.; Reed, Thomas E.; Harris, Michael; Gienapp, Phillip (2023). Data from: probing variation in reaction norms in wild populations: the importance of reliable environmental proxies [Dataset]. Dryad. https://doi.org/10.5061/dryad.zcrjdfnjr

Abstract

Many traits are phenotypically plastic, i.e., the same genotype expresses different phenotypes depending on the environment. Genotypes and individuals can vary in their response to the environment and this genetic (G×E) and individual (I×E) variation in reaction-norm slopes can have important ecological or evolutionary consequences. Studies on I×E/G×E often fail to show slope variation, potentially due to the choice of the environmental covariate. Identifying the genuine environmental driver of phenotypic plasticity (the cue) is practically impossible and hence only proxies can be used. If the proxy is too weakly correlated with the cue, this may lead researchers to conclude there is little or no (variation in) plasticity, and hence lead to downwardly biased estimates of the potential for plastic responses (or evolutionary change in the slope) in response to environmental change. Alternatively, the Environment-Specific Mean phenotype (ESM) across individuals—which captures all environmental effects on the phenotype—as covariate should be less prone to such bias. We showed by simulation—after verifying the concept analytically—that using weakly correlated proxies indeed biased estimates of slope variation vis-à-vis the true cue downward but that ESM as a covariate held up well, even when multiple sources of I×E or an interaction between environments (I×E×E) existed in the data. Analysis of two real datasets revealed that estimated I×E and G×E, respectively, were more sizeable and precise when using ESM as opposed to reasonably informative environmental proxies. We argue that the ESM approach should be adopted by biologists as a yardstick in the study of (variation in) plasticity in the wild and that it may serve as a useful starting point for the search of better environmental proxies and unravelling complex I×E or G×E patterns.

README

The Guillemot data contain the following columns:

ID: ID of the animal
Count: number of times (years) an animal has been observed breeding
YEAR: year of breeding
Subcolony: cliff area in which the animal bred that year (SF = South Face
C4 = Colony 4, WHI = Whiteface, HDE = Hide, DEN = Dense)
Min.Age: minimum estimated age of the animal.
LD: laying date (from January 1st).
NAO: North-Atlantic Oscillation index.

Note that Min.Age has some missing values that can be filled based on the year in which the animal was observed.

Methods

Data contain phenotypic breeding data and NAO data for the Common guillemot as described in Reed et al. (2006). These data were used as one of the two practical examples in the paper. See the readme file for details. For questions regarding these data, please contact Michael P. Harris (mph@ceh.ac.uk). For R scripts used to analyze the data, please see the supporting information to the main article associated with this dataset (Ramakers et al. 2023).

Ramakers, J.J.C., Reed, T.E., Harris, M.P. & Gienapp, P. (2023). Probing variation in reaction norms in wild populations: the importance of reliable environmental proxies. Oikos. doi: 10.1111/oik.09592

Reed, T.E., Wanless, S., Harris, M.P., Frederiksen, M., Kruuk, L.E.B. & Cunningham, E.J.A. (2006) Responding to environmental change: plastic responses vary little in a synchronous breeder. Proceedings of the Royal Society B: Biological Sciences, 273, 2713-2719.