The presence and abundance of Escherichia coli in beach sediment following a coastal renourishment project
Data files
Sep 19, 2023 version files 63.10 KB
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Lewis_et_al__2014_Joint.csv
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Lewis_et_al__2015_Joint.csv
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Lewis_et_al__Ecoli_2014.csv
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Lewis_et_al__Ecoli_2015.csv
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Lewis_et_al__Sand_2014.csv
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Lewis_et_al__Sand_2015.csv
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README.md
Abstract
Erosion poses a major threat to oceanic beaches worldwide. To combat this threat, management agencies often utilize renourishment, which supplements eroded beaches with offsite sand. This process alters the physical characteristics of the beach and can subsequently influence the presence and abundance of microbes. In this study, we examined how a renourishment project impacted sand grain size and the presence and abundance of Escherichia coli (E. coli), a common bacteria species. Using an observational field approach, we compared abundances of E. coli and sand grain sizes between non-renourished and renourished sections of Folly Beach, South Carolina, USA in 2014 and 2015. We found that E. coli was prevalent in every zone of the beach in both years of sampling. Additionally, we found that in comparison to non-renourished areas, renourished areas had significantly higher abundances of E. coli and coarser sand grains in the intertidal zone. However, these differences were temporary and only present following the initial renourishment event. Collectively, our findings raise concerns about how physical changes in sand grain size, and the introduction of offsite sand to a beach, could alter bacterial presence and growth. However, more work is needed to fully understand the timescales these effects operate upon.
README: The Presence and Abundance of Escherichia coli in Beach Sediment Following a Coastal Renourishment Project-README File
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Reference Information
Files Named: Lewis et al_Sand Data 2014.csv , Lewis et al_Sand Data 2015.csv, Lewis et al_Ecoli 2014.csv, Lewis et al_Ecoli 2015.csv, Lewis et al_2014 Joint Data.csv, Lewis et al_2015 Joint Data.csv
Associated Publication(s): The Presence and Abundance of Escherichia coli in Beach Sediment Following a Coastal Renourishment Project
DOI(s): (Manuscript In Prep)
Primary Author: Jordan Lewis
Other Authors: Victoria Frost, Matthew Heard
Date Created: 6/30/2023
Publisher: Yale University
License: Use of these data is covered by the following license:
- Title: CC0 1.0 Universal (CC0 1.0)
- Specification: https://creativecommons.org/publicdomain/zero/1.0/; the authors respectfully request to be contacted by researchers interested in the re-use of these data so that the possibility of collaboration can be discussed.
Reference History
Current Version:
Number: 1.0.0
Date: June 20, 2023
Persistent identifier: 10.5061/dryad.zgmsbcchp
Summary of changes: n/a
Embargo Provenance: n/a
Scope of embargo: n/a
Embargo period: n/a
Contact Information
Name: Jordan Lewis
Affiliations: Department of Ecology and Evolutionary Biology, Yale University
ORCID ID: 0000-0001-9684-3763
Email: jordan.lewis@yale.edu
Alternate Email: jalewis769@gmail.com
Alternate Contact:
Co-authorName: Matthew Heard
Affiliations: College of Science and Mathematics, Belmont University
ORCID ID: 0000-0002-4706-9991
Email: matthew.heard@belmont.edu
Alternate Email: N/A
Acknowledgments
Funding Sources: National Science Foundation Graduate Research Fellowship Program (2017246734) (JL). Winthrop University Ronald E. McNair Post-Baccalaureate Achievement Program (P217A130111) from the US Department of Education (JL). Rob Fisher Endowment of Belmont University (MH). P20GM103499 (SC INBRE) from the National Institute of General Medical Sciences, National Institutes of Health (MH)
Primary Location of Work: Folly Beach, SC and Dalton Hall, Winthrop University, Rock Hill, SC
Brief Project & Methods Description
This project was conducted to investigate how beach renourishment affects the abundance and distribution of E. coli on marine beaches. In the summer of 2014 and 2015, an observational field study was conducted at Folly Beach outside of Charleston, SC. In this study, the beach was divided into two separate areas: those that had been renourished and those that had not been renourished. There were 20 locations in the renourished area and 10 locations in the non-renourished area. Each location was divided into 3 areas based on relationship to the tide: the subtidal (areas that are always under the surface of the water), intertidal (areas that vary depending on the tide level), and dunes (areas never under the tide in normal circumstances). At each of these zones at each location, two sediment samples were taken and then mixed with distilled water to release colonies. E.coli counts were enumerated and reported as colony forming units (CFU) per 100 mL. E.coli counts for each year were recorded in individual files [File: Lewis et al_ Ecoli 2014.csv] and [File: Lewis et al_ Ecoli 2015]. At each location, the zones were also analyzed for their sand quality, which included color and grain size, as well as the grain size distribution. Sand data for each year was recorded in separate CSV fives [File: Lewis et al_ Sand 2014.csv] and [File: Lewis et al_Sand 2015.csv]. Regressions were run on the joint data, and those combination files are listed as [File: Lewis et al 2014 joint.csv] and [File: Lewis et al. 2015 joint.csv]. A full methods summary can be found in the Materials and Methods section of the manuscript.
Data and Files Overview
- File count: 6
- Total file size: 53.94 KB
- Range of individual file sizes: 2.50 KB - 14.82 KB
- File formats: .csv
Table of Contents
- Lewis et al_ Sand 2014.csv
- Lewis et al_ Sand 2015.csv
- Lewis et al_ Ecoli 2014.csv
- Lewis et al_ Ecoli 2015.csv
- Lewis et al_ 2014 Joint.csv
- Lewis et al_ 2015 Joint.csv
Setup
- Unpacking instructions: n/a
- Relationships between files/folders: "Lewis et al_ Sand 2014.csv" and "Lewis et al_ Sand 2015.csv" contain data from the sand grain sizes and size distributions across the beach. "Lewis et al_ Ecoli 2014.csv" and "Lewis et al_ Ecoli 2015.csv" contain data on the MPN of E. coli per sample. Following both of these, regressions were run using joint data from both. These are included in "Lewis et al_ 2014 Joint.csv" and "Lewis et al_ 2015 Joint.csv".
- Recommended software/tools: RStudio 2022.12.0+353; R version 4.2.2; JMP Pro 16
Details for: Lewis et al_ Sand 2014.csv
- Description: a comma-delimited file containing grain data for the sand samples collected in 2014. ** Format(s): .csv
- Size(s): 10.53 KB
- Dimensions: 91 rows x 13 columns
- Variables:
- Sample ID: Sample Identification.
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- VC Percentage: Percentage of the sample containing Very Coarse Grains.
- VC Color: Average color of the Very Coarse grains. [light, mixed, dark]
- C Percentage: Percentage of the sample containing Coarse Grains.
- C Color: Average color of the Coarse grains.[light, mixed, dark]
- M Percentage: Percentage of the sample containing Medium Grains.
- M Color: Average color of the Medium grains. [light, mixed, dark]
- F Percentage: Percentage of the sample containing Fine Grains.
- F Color: Average color of the fine grains. [light, mixed, dark]
- VF Percentage: Percentage of the sample containing Very Fine Grains.
- VF Color: Average color of the Very Fine grains. [light, mixed, dark]
Notes: N/A
Details for: Lewis et al_ Sand 2015.csv
- Description: a comma-delimited file containing grain data for the sand samples collected in 2015.
- Format(s): .csv
- Size(s): 9.38 KB
- Dimensions: 91 rows x 13 columns
- Variables:
- Sample ID: Sample Identification.
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- VC Percentage: Percentage of the sample containing Very Coarse Grains.
- VC Color: Average color of the Very Coarse grains. [light, mixed, dark]
- C Percentage: Percentage of the sample containing Coarse Grains.
- C Color: Average color of the Coarse grains. [light, mixed, dark]
- M Percentage: Percentage of the sample containing Medium Grains.
- M Color: Average color of the Medium grains. [light, mixed, dark]
- F Percentage: Percentage of the sample containing Fine Grains.
- F Color: Average color of the fine grains. [light, mixed, dark]
- VF Percentage: Percentage of the sample containing Very Fine Grains.
- VF Color: Average color of the Very Fine grains. [light, mixed, dark]
Notes: N/A
Details for: Lewis et al_ Ecoli 2014.csv
- Description: a comma-delimited file containing E.coli data for sand and water samples collected in 2014.
- Format(s): .csv
- Size(s): 3.57 KB
- Dimensions: 91 rows x 5 columns
- Variables:
- Sample ID: Sample Identification
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- MPN E.coli: Most Probable Number of E.coli isolated from the sample.
- MPNL: The Natural Log of the Most Probable Number of E.coli isolated from sample plus 1.
Notes: N/A
Details for: Lewis et al_ Ecoli 2015.csv
- Description: a comma-delimited file containing E. coli data for sand and water samples collected in 2015.
- Format(s): .csv
- Size(s): 2.50 KB
- Dimensions: 91 rows x 5 columns
- Variables:
- Sample ID: Sample Identification
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- MPN E.coli: Most Probable Number of E.coli isolated from the sample.
- MPNL: The Natural Log of the Most Probable Number of E.coli isolated from sample plus 1.
Notes: N/A
**Details for: Lewis et al_ 2014 Joint.csv **
- Description: a comma-delimited file containing E.coli and sand data for samples collected in 2014.
- Format(s): .csv
- Size(s): 14.82 KB
- Dimensions: 91 rows x 15 columns
- Variables:
- Sample ID: Sample Identification
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- MPN E.coli: Most Probable Number of E.coli isolated from sample.
- MPNL: The Natural Log of the Most Probable Number of E.coli isolated from sample plus 1.
- VC Percentage: Percentage of the sample containing Very Coarse Grains.
- VC Color: Average color of the Very Coarse grains. [light, mixed, dark]
- C Percentage: Percentage of the sample containing Coarse Grains.
- C Color: Average color of the Coarse grains. [light, mixed, dark]
- M Percentage: Percentage of the sample containing Medium Grains.
- M Color: Average color of the Medium grains. [light, mixed, dark]
- F Percentage: Percentage of the sample containing Fine Grains.
- F Color: Average color of the fine grains. [light, mixed, dark]
- VF Percentage: Percentage of the sample containing Very Fine Grains.
- VF Color: Average color of the Very Fine grains. [light, mixed, dark]
Notes: N/A
**Details for: Lewis et al_ 2015 Joint.csv **
- Description: a comma-delimited file containing E.coli and sand data for samples collected in 2015.
- Format(s): .csv
- Size(s): 13.14 KB
- Dimensions: 91 rows x 15 columns
- Variables:
- Sample ID: Sample Identification
- Status: Whether the site was renourished or not renourished.
- Beach Zone: Whether the sample came from the dunes, intertidal, or subtidal.
- MPN E.coli: Most Probable Number of E.coli isolated from the sample.
- MPNL: The Natural Log of the Most Probable Number of E.coli isolated from sample plus 1.
- VC Percentage: Percentage of the sample containing Very Coarse Grains.
- VC Color: Average color of the Very Coarse grains. [light, mixed, dark]
- C Percentage: Percentage of the sample containing Coarse Grains.
- C Color: Average color of the Coarse grains. [light, mixed, dark]
- M Percentage: Percentage of the sample containing Medium Grains.
- M Color: Average color of the Medium grains. [light, mixed, dark]
- F Percentage: Percentage of the sample containing Fine Grains.
- F Color: Average color of the fine grains. [light, mixed, dark]
- VF Percentage: Percentage of the sample containing Very Fine Grains.
- VF Color: Average color of the Very Fine grains. [light, mixed, dark]
Notes: N/A
Statistics & Representation in Manuscript Figures
We examined the abundance of E. coli in 2014 and 2015 using two-way ANOVA and pairwise t-tests [Lewis et al_ Ecoli 2014.csv & Lewis et al_ Ecoli 2015.csv] [Figure 3]. To determine relationships between physical characteristics of the sand and the number of E. coli in both renourished and non-renourished sections\, we also used pairwise t-tests and linear regression [Lewis et al_ 2014 Joint.csv & Lewis et al_ 2015 Joint.csv][Figure 4]. To compare differences between sand grain sizes in renourished versus non-renourished sections of the beach\, we used an ANOVA and pairwise t-tests [Lewis et al_ Sand 2014.csv & Lewis et al_ Sand 2015.csv]. The prevelance of E.coli in samples across the beach is shown in Figure 2 of the paper.
END OF README
Methods
The raw data was collected by methods outlined in the materials and methods section of the manuscript. Data was recorded into an Excel spreadsheet, cleaned, then uploaded into JMP Pro 14 for statistical analysis and figure creation.