Alignment: \\bournemouth.ac.uk\data\Staff\Home\dandreou\VALIDATION PAPER\Validation Factor 2011\MHC Alleles_sequences.txt ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 5 15 25 35 45 55 Neu07 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ GAGTTCATCA GGTCTTCTTA CTTCAACAAG No02 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ GAGTACATCG ACTCGTATTT CTTCAACAAG No56 GTCTTTAACT CCACGGAGCT GAAGGACATC GAGTTCATCA GGTCTGTTTA CTACAACAAG No59 GTCTTTAACT CCACGGAGCT GAAGGACATC GAGTTCATCG ACTCGTATTA CTTCAACAAG No60 GTCTTTAACT CCACGGAGCT GAAGGACATC GAGTACATCC AGTCGTATTA CTACAACAAG No61 GTCTTTAACT CCACGGAGCT GAAGGACATC GAGTTCATCG ACTCGTATTA CTTCAACAAG No62 GTCTTTAACT CCACGGAGCT GAAGGACATC GAGTACATCA GGTCTTATTA CTACAACAAG ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 65 75 85 95 105 115 Neu07 AAAGAAGACA CGAGGTTCAG CAGCTCAGTG GGGAAGTTTG TCGGCTTCAC TGAACGCGGA No02 TTAGAACTCA CGAGGTTCAG CAGCTCAGTG GGGAAGTTTG TCGGCTTCAC TGAGTACGGA No56 TTAGAATACA CGAGGTTCAG CAGCTCAGTG GGGAAGTTTG TCGGCTTCAC TGAACGCGGA No59 TTAGAATACA CGAGGTTCAG CAGCTCAGTG GGGAAGTTTG TCGGCTTCAC TGAGTACGGA No60 TTAGAATACA CGAGGTTCAG CAGCTCAGTG GGGAAGTTTG TCGGCTTCAC TGAGTACGGA No61 TTAGAATACA CGAGGTTCAG CAGCTCAGTG GGGAAGTATG TCGGCTTCAC TGAACGCGGA No62 TTAGAATACA CGAGGTTCAG CAGCTCAGTG GGGAAGTATG TCGGCTTCAC TGAGTACGGA ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 125 135 145 155 165 175 Neu07 GTGAAGAACG CTGAATACTG GAACAGCAAC CCTTCATATC TGAGTGCTAT GAGAGCTCAG No02 GTGGGGAACG CTGAATACTG GAACAACAAC CCTTCATATC TGAGTGCTAT GAAGGCTCAG No56 GTGAAGAACG CTGAATACTG GAACAACGAC CCTTCAAAAG TGAGTGCTAT GAAGGCTCAG No59 GTGAGGAACG CTGAATACTG GAACAACGAC GCTTCATTTC TGAGTGCTAT GAGAGCTCAG No60 GTGAAGAACG CTGAATACTG GAACAACGAC GCTTCACTTC TGAGTGCTAT GAAGGCTCAG No61 GTGAAGATCG CTGCTGACTG GAACAACAAC CCTTCACTTC TGAGTGGAGA GAAGGCTCAG No62 GTGAGGATCG CTGCAGCCTG GAACAACAAC CCTTCAATTC TGAGTAGAGC GAAGGCTCAG ....|....| ....|....| ....|....| ....|....| ....|....| ....|....| 185 195 205 215 225 235 Neu07 AAGGAGGGTT ACTGTCTGAA CAGCATCCAG ATCGATTACA CAGCTGCTCT GACTAAGTCC No02 AAGGAGGTTT ACTGTCTGAA CCACGTCCCG GTCTATTACA GCAATGCTCT GACTAAGTCC No56 AAGGAGGGTT ACTGTCTGCA CAACATCCAG ATCGATTACA CAGCTGCTCT GACTAAGTCC No59 AAGGAGGTTT ACTGTCTGAA CCACGTCCCG GTCTATTACA GCAATGCTCT GACTAAGTCC No60 AAGGAGGCCG TCTGTCTGAA CCACGTCCCG GTCTATTACA ACAATATGCT GACTAAGTCC No61 AAGGAGGTTT ACTGTCTGCA CAACATCCAG ATCTGGTACA ACAATATTCT GACTAAGTCC No62 AAGGAGGCTT ACTGTCTGCA CAACATCCAG ATCGATTACA ACAATATGCT GACTAAGTCC ....|.. 245 Neu07 G...... No02 G...... No56 GGTGAGT No59 GGTGAGT No60 GGTGAGT No61 GGTGAGT No62 GGTGAGT