DRYAD DATA PACKAGE ——————————————————— Gottscho, A.D., Wood, D.A., Vandergast, A.G., Lemos-Espinal, J., Gatesy, J., Reeder, T.W., 2016. Lineage diversification of fringe-toed lizards (Phrynosomatidae: Uma notata complex) in the Colorado Desert: Delimiting species in the presence of gene flow. Molecular Phylogenetics and Evolution, http://dx.doi.org/10.​1016/​j.​ympev.​2016.​09.​008 DAPC We used Discriminant Analysis of Principal Components in the R package adegenet 2.0.0 (Jombart et al. 2010) using the structure (.str) file output from pyRAD. Input file and annotated R script are provided. REFERENCES Jombart, T., Devillard, S., Balloux, F., 2010. Discriminant analysis of principal components: a new method for the analysis of genetically structured populations. BMC Genet. 11, 94.