######################################### ALIGNMENTS ########## Dataset_S1_WP.fa #The WP matrix used for phylogenetic analyses Dataset_S2_WP.txt #The partition file for concatenated alignments of dataset WP Dataset_S3_NCS.fa #The NCS matrix used for phylogenetic analyses Dataset_S4_NCS.txt #The partition file for concatenated alignments of dataset NCS Dataset_S5_PCS.fa #The PCS matrix used for phylogenetic analyses Dataset_S6_PCS.txt #The partition file for concatenated alignments of dataset PCS Dataset_S7_WP-ω.fa #The WP-ω matrix used for phylogenetic analyses Dataset_S8_WP-ω.txt #The partition file for concatenated alignments of dataset WP-ω Dataset_S9_PCS-ω.fa #The PCS-ω matrix used for phylogenetic analyses Dataset_S10_PCS-ω.txt #The partition file for concatenated alignments of dataset PCS-ω ######################################### TREES ##### 1_WP_RAxML.tre #ML tree inferred from dataset WP using RAxML 2_WP_BI.tre #BI tree inferred from dataset WP using PhyloBayes 3_WP_IQ-TREE.tre #ML tree inferred from dataset WP using IQ-TREE 4_NCS_RAxML.tre #ML tree inferred from dataset NCS using RAxML 5_NCS_IQ-TREE.tre #ML tree inferred from dataset NCS using IQ-TREE 6_PCS_RAxML.tre #ML tree inferred from dataset PCS using RAxML 7_PCS_IQ-TREE.tre #ML tree inferred from dataset PCS using IQ-TREE 8_WP-ω_RAxML.tre #ML tree inferred from dataset WP-ω using RAxML 9_WP-ω_IQ-TREE.tre #ML tree inferred from dataset WP-ω using IQ-TREE 10_PCS-ω_RAxML.tre #ML tree inferred from dataset PCS-ω using RAxML 11_PCS-ω_IQ-TREE.tre #ML tree inferred from dataset PCS-ω using IQ-TREE