#NEXUS Begin trees; [Treefile saved Mon Mar 08 17:33:10 2010] [! >Data file = D:\My Documents\iFolder\Yael_Bathyergidae\Rochelle project\Final Align each gene\all_yaelle.nex > >Processing TREES block from file "ok.tre": > Keeping: trees from file (replacing trees in memory) > 1 tree read from file ] Translate 1 MusXXXXXXX, 2 RattusXXXX, 3 Mesocricet, 4 Tachyoryct, 5 Nannospala, 6 RhizomysXX, 7 Acomysxxxx, 8 Acomysxcax, 9 Gerbillusx, 10 Merionesxx, 11 Microtusxx, 12 DipusXXXXX, 13 JaculusXXX, 14 DipodomysX, 15 ThomomysXX, 16 GeomysXXXX, 17 Eliomysxxx, 18 GlisXXXXXX, 19 DryomysXXX, 20 MarmotaXXX, 21 Sciurusxxx, 22 Aplodontia, 23 CastorXXXX, 24 Anomalurus, 25 PedetesXXX, 26 Massoutier, 27 Ctenodacty, 28 Thryonomys, 29 PetromusXX, 30 Bathyergus, 31 Fukomysxxx, 32 Heteroceph, 33 TrichysXXX, 34 HystrixXXX, 35 Chinchilla, 36 DinomysXXX, 37 EchimysXXX, 38 Abrocomaxx, 39 CapromysXX, 40 OctodonXXX, 41 CaviaXXXXX, 42 Hydrochoer, 43 AgoutiXXXX, 44 ErethizonX, 45 Oryctolagu, 46 LepusXXXXX, 47 OchotonaXX, 48 HomoXXXXXX, 49 MacacaXXXX, 50 LemurXXXXX, 51 Cynocephal, 52 TupaiaXXXX ; tree PAUP_1 = [&U] (((((((((((1:0.042699,2:0.039121):0.030020,(3:0.040868,11:0.052369):0.014338):0.000234,((7:0.017946,8:0.015021):0.046350,(9:0.024313,10:0.020322):0.037820):0.013195):0.045119,((4:0.024180,6:0.017509):0.032279,5:0.032108):0.027215):0.020798,(12:0.015219,13:0.024933):0.082962):0.017232,(24:0.050389,25:0.070500):0.011659):0.002006,((14:0.059151,(15:0.019035,16:0.015345):0.061588):0.074656,23:0.060862):0.007067):0.008599,((26:0.008734,27:0.015047):0.101096,((((28:0.039742,29:0.039942):0.029773,((30:0.010736,31:0.012894):0.034817,32:0.033381):0.006440):0.007115,(((35:0.020981,36:0.031981):0.012841,(((37:0.026133,39:0.027017):0.016276,40:0.036309):0.004075,38:0.039867):0.023358):0.002842,(((41:0.035375,42:0.027119):0.012701,43:0.022556):0.009154,44:0.028647):0.002364):0.010543):0.004777,(33:0.021780,34:0.017914):0.027480):0.036107):0.013759):0.003168,(((17:0.039723,19:0.025808):0.029375,18:0.035764):0.041965,((20:0.035833,21:0.032045):0.012224,22:0.047776):0.019222):0.004017):0.013410,((45:0.018821,46:0.012507):0.037777,47:0.103199):0.042839):0.004810,(((48:0.011773,49:0.017071):0.038587,50:0.048908):0.006664,51:0.064777):0.002043,52:0.091769); End;