#NEXUS Begin trees; [Treefile saved Sat Jan 31 19:29:04 2015] [! >Data file = C:\Users\kerry\Documents\PhD\labstuff\PAUP\B Fib phased 1000\Bfibphased.nex >Bootstrap method with heuristic search: > Number of bootstrap replicates = 1000 > Starting seed = 1390046477 > Optimality criterion = parsimony > Character-status summary: > Of 532 total characters: > All characters are of type 'unord' > All characters have equal weight > 510 characters are constant > 7 variable characters are parsimony-uninformative > Number of parsimony-informative characters = 15 > Gaps are treated as "missing" > Multistate taxa interpreted as uncertainty > Starting tree(s) obtained via stepwise addition > Addition sequence: random > Number of replicates = 100 > Starting seed = 1787250571 > Number of trees held at each step during stepwise addition = 1 > Branch-swapping algorithm: tree-bisection-reconnection (TBR) > Steepest descent option not in effect > Initial 'MaxTrees' setting = 100 > Branches collapsed (creating polytomies) if maximum branch length is zero > 'MulTrees' option in effect > Topological constraints not enforced > Trees are unrooted > > 1000 bootstrap replicates completed > Time used = 00:23:39.6 ] Translate 1 Rifleman, 2 Clara, 3 Perry, 4 Henderson, 5 Wangapeka_a, 6 Wangapeka_b, 7 Thompson_a, 8 Thompson_b, 9 Lewis, 10 Bealey_a, 11 Bealey_b, 12 Whymper_a, 13 Whymper_b, 14 Aoraki1, 15 Aoraki2_a, 16 Aoraki2_b, 17 Twin, 18 Landsborough_a, 19 Landsborough_b, 20 Ahuriri_a, 21 Ahuriri_b, 22 Haast_a, 23 Haast_b, 24 Eyres, 25 Murchies_a, 26 Murchies_b, 27 Roe, 28 MacArthur_a, 29 MacArthur_b ; tree PAUP_1 = [&U] (1,(((2,7,8)55.866505,10)78.424881,((3,4,6,9,(11,13)63.700001,12,15,16,17)62.671024,5,14,18,19,(20,22)56.130219,(21,23)56.306221,24,25,26,27,28,29)57.082222)100.000000)0; End;