#NEXUS BEGIN DATA; DIMENSIONS NTAX=8 NCHAR=357; FORMAT DATATYPE=DNA MISSING=? GAP=- INTERLEAVE ; MATRIX [ 10 20 30 40 50 60 70 80 90 100] [ . . . . . . . . . .] Androc6 NNNAAYGGNYTNCARMGNATGATHCCNTTYCAYAAYTTYGAYGARCCNYTNGARGGNTAYGCNCCNCAYYTNACNWSNYTNGTNWSNGGNYTNCARTAYG [100] Aphonopelma_r NNTAATGGCCTTGCGAGAATGATTCCGTTCCACAACTTCCATGAACCACTGGAAGGTTATAATCCACATCTGAGCTCAACTCAAAATGGATTGCCGTACG [100] Bothriocyrtum NNTAATGGACTTTCAAGGATGGTTCCTTTCCACAACTTCCACGAGCCCTTGGAAGGTTATGCACCTCATCTGACCTCCACGCAAAATGGCTTGCCTTATT [100] Eurypelma NNTAATGGCCTTGCGAGAATGATTCCGTTCCACAACTTCCATGAACCACTGGAAGGTTATAATCCACATCTGAGCTCAACTCAAAATGGATTGCCCTACG [100] Sphodros NNAAACGGTCTGCCAAGAATGCTTCCGTTCCATAACTTCCACGAACCCTTAGAAGGATTTTCTTCGCATTTGAGCTCTCTTTTGAACGGCTTACCCTATG [100] Ummidia NNCAATGGCTTGGCAAGGATGGTTCCTTTCCATAACTTCCACGAGCCCTTGGATGGTTATGCGCCTCATCTTAGCTCCACTCAAAACGGATTACCCTATG [100] Aphonopelma_s NN?????????????????????????????????????????????????????????????????????????????????????????????????? [100] Acanthoscurria NNTAATGGCCTTCCGAGAATGATTCCGTTCCACAACTTCCACGAGCCACTGGAAGGTTATAATCCACATCTGAGCTCAACTCAAAATGGATTGCCCTACG [100] [ 110 120 130 140 150 160 170 180 190 200] [ . . . . . . . . . .] Androc6 CNWSNMGNCCNGARGGNTAYWSNATHCAYGAYYTNWSNGAYGTNGAYGTNCARGAYATGGTNMGNTGGMGNGARMGNATHYTNGAYGCNATHAAYATGCA [200] Aphonopelma_r CATCTCGTCCTGAAGGAATGACCCTGTGCGATATGCATGAAGTCTCCGTTCAAGACTTGGAAAGATGGAGGGAAAGAATTTTGGATGCTATCAATCTCGG [200] Bothriocyrtum CATCTCGTCCCGAAGGAATGTCTCTTCATGACATGCACGAAGTCTCCGTTCAGGACTTGGAAAGGTGGAGGGAGAGGATTCTGGAAGCCATCAATCTCAG [200] Eurypelma CATTTCGTCCTGAACCAATGACCCTGTGCGATATGCATGATGTCTCCGTTCAAGACTTGGAAAGATGGAGGGAAAGAATTTTGGATGCTATCAATCTCGG [200] Sphodros CTTCCCGCCCTGAAGGAATTTCCCTGAAGGATCTCAAGTCGGTCTCCGTTCAAGACATGGATAGATGGAGAGAAAGAATCTTGGAGTCTATTAACCTTGG [200] Ummidia CATCTCGTCCACAAGGAATGGTACTTCACGACATGCACGAAGTGTCTGTACAGGACTTGGAAAGATGGAGGGAGAGGGTCCTGGAAGCCATCAATCTCAG [200] Aphonopelma_s ???????????????????????????????????????????????????????????????????????????????????????????????????? [200] Acanthoscurria CATCTCGTCCTGAAGGAATGACTCTGTGCGATATGCATGATGTCTCCGTTCAAGACTTGGAAAGATGGAGGGAAAGAATTCTGGATGCTATCAATCTCGG [200] [ 210 220 230 240 250 260 270 280 290 300] [ . . . . . . . . . .] Androc6 YTAYATHGTNGAYAARGAYAAYAAYAARATHCCNYTNGAYATHGARCAYGGNACNGAYATHYTNGGNGAYATHATHGARWSNWSNGAYGARWSNAARAAY [300] Aphonopelma_r TGAGGTTACCGATCCAAATGGAGACGAGTACGCCCTGGATGAGACTTTCGGTATTGATGTTCTTGGAGCAATCATCGAGTCCAGCCGTGATTCCAAAAAC [300] Bothriocyrtum TCAAGTTACCGACCCGAACGGAATTGAATATGCCCTGGACGAGACGTTCGGCATCGATATCTTAGGAGCCATCATCGAGTCCAGTCGTGATTCCAAGAAC [300] Eurypelma TGAGGTTACCGATCCAAATGGAGACGAGTACGCCCTGGATGAGACTTTCGGTATTGATGTTCTTGGAGCAATCATCGAGTCCAGCCGTGATTCCAAAAAC [300] Sphodros GTACGTCATTGACGCAGTCGGAAATGAAACAGCTCTGGATGAAACACGTGGAATCGACATTCTTGGTGACATCGTCGAATCCAGCAGCGAATCGCCGAAC [300] Ummidia ACAAGTTACTGACGCCAACGGAAACGAGTATGACCTGGACGAGACATTCGGCATCGACTTACTAGGAGCCATCATAGAGTCCAGTCACGACTCCAAAAAT [300] Aphonopelma_s ???????ATCGATCCAAATGGAGAGGAGTACGCCCTGGATGAGACTTTCGGTATTGATGTTCTTGGAGCAATCATTGAGTCTAGCCGTGATTCCAAAAAC [300] Acanthoscurria TGAGGTTACCGATCCACATGGAGATGAGTTCGCCCTGGATGAAACTTTTGGTATTGATGCTCTTGGAGCAATCATTGAGTCCAGCCGTGATTCCAAAAAC [300] [ 310 320 330 340 350 ] [ . . . . . ] Androc6 GTNGARTAYTAYGGNWSNYTNCAYAAYTGGGGNCAYGTNATGATGGCNAAYATHACN [357] Aphonopelma_r AGAGAGTACTACGGAAGTCTTCACAACTGGGGTCACGTTCTCATGGCTAATATTGTT [357] Bothriocyrtum CGAGAATACTATGGAAGCCTTCACAACTGGGGTCACGTGCTGATGGCAAACATCGTC [357] Eurypelma AGAGAGTCATACGGAAGTCTTCACAACTGGGGTCACGTTCTCATGGCTAATATTGTT [357] Sphodros AGAGAATATTATGGAAGTCTGCACAACTGGGGTCACGTTCTCATGGCCAACATCGTA [357] Ummidia CGGGAGTACTATGGAAGCCTTCACAATTGGGGACACGTGCTGATGGCAAACGTTGTC [357] Aphonopelma_s AGAGAGTACTATGGAAGTCTTCACAACTGGGGTCACGTTCTCATGGCTAATGTTGTT [357] Acanthoscurria AGAGAGTACTACGGAAGCCTTCACAACTGGGGTCACGTTCTCATGGCTAATATTGTT [357] ; END; BEGIN CODONS; CODONPOSSET * CodonPositions = 1: 1-355\3, 2: 2-356\3, 3: 3-357\3 357; CODESET * UNTITLED = Universal: all ; END; BEGIN MRBAYES; log start filename = HemoCpartlog.out; charset 1st_pos = 1-355\3; charset 2nd_pos = 2-356\3; charset 3rd_pos = 3-357\3; partition by_codon = 3:1st_pos,2nd_pos,3rd_pos; set partition=by_codon; Prset applyto= (all) statefreqpr=dirichlet(1,1,1,1); Lset applyto=(1) nst=2 rates=gamma; Lset applyto=(2) nst=6 rates=equal; Lset applyto=(3) nst=2 rates=equal; unlink shape=(all) pinvar=(all) statefreq=(all) revmat=(all); prset applyto= (all) ratepr=variable; mcmc ngen=5000000 printfreq=100 samplefreq=100 savebrlens=yes; END; begin trees; [Note: This tree contains information on the topology, branch lengths (if present), and the probability of the partition indicated by the branch.] tree con_50_majrule = (Androc6:0.353318,Sphodros:0.168449,((((Aphonopelma_r:0.006816,Eurypelma:0.017507)0.64:0.012195,Aphonopelma_s:0.041520)0.56:0.014737,Acanthoscurria:0.027545)1.00:0.106030,(Bothriocyrtum:0.051084,Ummidia:0.137054)1.00:0.092227)1.00:0.189623); [Note: This tree contains information only on the topology and branch lengths (mean of the posterior probability density).] tree con_50_majrule = (Androc6:0.353318,Sphodros:0.168449,((((Aphonopelma_r:0.006816,Eurypelma:0.017507):0.012195,Aphonopelma_s:0.041520):0.014737,Acanthoscurria:0.027545):0.106030,(Bothriocyrtum:0.051084,Ummidia:0.137054):0.092227):0.189623); end; BEGIN ASSUMPTIONS; OPTIONS DEFTYPE=unord PolyTcount=MINSTEPS ; END; BEGIN MacClade; Version 4.0 75; LastModified -965561781; FileSettings editor '0' '0' '1' '1'; Singles 100; Editor 000110011111111000100 '0' '24' Geneva '9' '100' '1' all; EditorPosition '40' '4' '723' '1011'; TreeWindowPosition '40' '2' '728' '1018'; ListWindow Characters closed Geneva '9' '50' '10' '265' '399' 00; ListWindow Taxa closed Geneva '9' '50' '10' '276' '490' 100; ListWindow Trees closed Geneva '9' '50' '10' '276' '490' ; ListWindow TypeSets closed Geneva '9' '50' '10' '276' '490' ; ListWindow WtSets closed Geneva '9' '50' '10' '276' '490' ; 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