[Nexus file for D2 with MrBayes 3.2 commands] [Nexus tree with branch lengths, divergence dates, posterior probabilities and other info readable in Figtree is appended at end of this file] #NEXUS [Nexus file with MrBayes 3.2 commands] BEGIN DATA; DIMENSIONS NTAX=65 NCHAR=247; FORMAT DATATYPE=standard MISSING=? GAP=- ; MATRIX [See List below for comments on synomyms and composite taxa] Dromaeosauridae 0000000000 0000000000 0000000000 0000000??0 0000000000 0000000000 0000000000 0001????1? 0000000000 000?000000 000000020? (01)??0000000 0000000100 0000000000 0010000000 0??000?000 0000000000 00(01)0000000 (01)000000000 00010000(01)0 0?00000000 0100000000 0000000000 00(01)0000000 0000000 Archaeopteryx 0000000000 0000?00100 10?00?000? ?0?000???0 000000?100 0?100000?? 00000?0002 0001????0? 0000000000 000?0000?0 ?0000000?? ?????????? 000?000110 0000000000 ???0000000 0??0010000 0100000000 0000002000 000001?000 1?010000?1 0?00000?00 01?0??0??0 0000000000 000?0?00?0 0010001 Ambiortus ?????????? ?????????? ?????????? ?????????? ?????????? 01?0?????? 20???????? ?????????? ?1?111001? ??1?(01)1??01 ???210???? ?????????? 1000100?10 ?????????? ?????????? ?0?3????(12)? ????????10 10???????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Anas 2123011310 1111111111 1111111211 2111?10210 0001011?10 2110121111 0006012024 0202100020 1111111010 020?210000 0012100231 1100113301 1100111100 0301111101 0000100111 0123120132 1111110210 11??123110 1111101011 1121012110 1121101110 0222011121 1201120130 1321022000 0101112 Apsaravis ?????????? ?????????? ??????1(01)?? ???1?1???? 1????????0 21?1?201?? 00?4??0?24 ?10??????? ?111110000 1111111001 001????(12)30 ???11????? 1100100010 1110000111 1111101211 01?3110011 10110???1? ???????100 011111?111 012??12110 1(12)?110??1? ??20121??1 1(12)?111001? 1?200100?0 0????0? Archaeorhynchus 1013111(12)?? ?????????? ?????????? ???1?00??0 0?00??1??? 0?????0??1 ???2000??(34) 0111?????? 01111?00?0 ?20?(01)10000 ?0?21002(23)1 (12)??1?????? ??000??010 ????0???01 10?10????1 01?01??002 ??0??0?210 10???23000 0????10110 0?(12)10010?? ????????0? 0(12)00????21 1(01)010000?? ??0?0100?0 0?????? Baptornis_advenus 1??3?????? ????????11 ???00?111? ??????0??1 ?0?10101?0 21001?1111 2004010?13 020?100011 ?0101?0010 010?0????? 0??????2(12)? ???0111??0 ?????????? ??1000000? ???0000010 0????????? ?????????? ??????0100 0121101110 0121012110 1121201110 1221111121 1201?2?110 1322112000 1?????? Baptornis_varneri ?????????? ?????????? ?????????? ?????????? ?????????0 21?01?1??1 ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???????10? ???1???110 0?210121?? ???2201?10 1221111121 1201?2?110 1?22122000 1?????? Boluochia ?1(12)(02)?????? ?????????? ?????????? ?????????? ?????????? ?????????? ????????2? ???????1?? ?????????? ?????????? ???????(12)(12)? (12)??????20? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???????110 101???10?? ????????0? ?????????? 0(01)?1001000 02??3200?0 011???? Cathyaornis (12)0(12)0??0(012)?? ?????????? ?????????? ???000???? 00?????1?? 1??1??0??? 11?2????24 0?0?0111?? ?1111?0??? 0???000100 ?0111?3221 22111??20? 0011?11010 211(01)010111 11011????1 10?3110001 0?(01)0001200 1010122000 000??11??? ???100???? 12????1??? ?(01)?????1?1 ?????????? ?????????? ??????? Changchengornis 1?231111?0 ????????1? ?????0???? ???1?11??0 ?0??100??? (12)????????? 2??1???024 ??0?0000?? 0100?0?000 ????000000 ?0?000021? 1??01??10? 0?0????02? ?????????? ???01????? 0????0?000 0?0??00000 0021002??? 0????????? ??(12)???1??? ?????????0 ?????????1 10000?0?0? ?2??0100?0 011?0?? Chaoyangia ?????????? ?????????? ?????????? ?????????? ?????????? ??????0??? (12)??(234)?????? ????????(12)1 ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ????????0? 0??0???010 10(12)1?001?0 ?0???0???? ?(12)???????1 ?????????? ?????????? ??????? Columba 2123111311 1211111111 1111111211 2111?10??0 00?101??11 2111121?11 0016??2?24 ?212100020 1111111010 ?20?310001 ?012100230 201011?411 1101111100 0?01111101 0011111211 01?3121031 1021010211 11??101110 1121101111 0121012110 1121101?10 ?222111121 1201120220 1322002000 ?111112 Concornis ?????????? ?????????? ?????????? ?????????? ?????????? ??????01?? 11???????? 0?01?????? ?111110?01 ?11?00?1?? ???1112221 221110?20? 00111??0(01)0 211??????1 ????1112?? ?????????? 0??0???200 10(01)0122??? ???????11? 1?(12)??01?0? ????????11 11???????1 110?0010?? 0(01)??0000?0 01????? Confuciusornis_dui ??23111??? ?????????? ???0?????? ???1?????? ?0??1????? ?????????? ???(012)????14 ?10?0??0?? 0????????? ?????????? ???????2(12)? 0??0???10? 0?0??00021 ?????????? ???01????? 0???1??0(01)0 0?00?00(01)?? 0021002??? ?????????? ?????????? ??(02)??????? ??1??????? 10????0?00 ????0(12)00?0 010?0?? Confuciusornis_sanctus 10231111?0 ?????00010 110000120? ??11?11210 10?1100?10 1?101(01)0111 2001000024 000?00001? 0100?0?000 0???000000 00000002(12)1 11?0112100 0000100021 0?00000101 0000100210 001210?000 ?100?00000 0021002000 00000?1010 1111001010 1120101?1? 0010000?11 1000010001 ?210000000 011000? Crypturellus 2123111311 1?10011?11 1110111210 1011?10??0 1?1?011??? 2111?21?11 ?016??2?24 ?21110?02? 1111111010 020?110?0? ??121?0230 ??????2??? 110?111100 1?01110001 00011?1??? 01?312103? 10???1021? 11??12?100 01?1??11?1 0121012110 11222???10 ?222???121 12?112022? 132?0020?0 ?101101 Didactylornis ???0?????? ?????????? ?????????? ???1?0???? 00?????1?? ???????1?? 0???????24 ??1??????? 011??????0 ?????00??? ???000???? ?????????? ????00??11 ????????01 ???1?????? 0??(12)1????? ?000?10000 10(01)?1(01)30?? ???????0?? ?0???010?? ????????1? 0????????? 10?00000?? 0???0000?0 011???? Elsornis ?????????? ?????????? ?????????? ?????????? ?????????? (01)??10?0?1? 10???????? ?????????? ?111110001 121?000100 010111(23)220 10?11??(12)0? 0011000000 0(12)0(12)000011 1??0100(12)1? 1??31????? 0?(01)?01???? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Enaliornis ?????????? ?????????? ??????11?? ?????????? ?????????? 21?0??1??? 2????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???????1?? ????1????? ??2?????10 1221201110 1221111??? 1201???110 1???012000 0?????? Eoalulavis ?????????? ?????????? ?????????? ?????????? ?????????? 00111200?? 2?0??????? ????????0? ?111110101 1110000000 0?111?312? 0??010?30? 0011110010 2110010011 111111?21? 1????????? 0??1?01100 1????2???0 ?????1???? ?????????? 1?1??????? ?????????? ?????????? ?????????? ???1??? Eocathayornis ???0?????? ?????????? ???0???0?? ???000???? 00?????1?? ??????00?? ?????????? ?????????? ?11?????01 ????000000 ??0????221 2(12)111??20? ?01??1?000 ???(01)????11 ???10????? ?0?31??001 0??0001200 100011???? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Eoconfuciusornis (12)?231?1(01)?0 ??????0??? ?????????? ???1?01??0 00??100??? ?0?0?00??? 0??1???024 1???0??0?? 0000???000 000?0000?0 ?0000?02(12)? ?????????? 0?00000?10 0?0???000? ???01????? 0??01??000 01?0?00000 00210020?? 0??0?????? ???10010?? ????????0? ?????10??? ?0?0000000 02?00200?0 01000?? Eoenantiornis (01)010??0??? ?????????? ???0?????? ???00????? ???????1?? ?????????? ???(012)????24 020?????1? 0111110101 ?11000??00 ???11122(123)? 1??110?200 0?1??1?000 ?????????? ???11????? 10?31??000 0?00001100 1010122??? 0????????? ??(12)??0(12)0?? ??1??????? ?????????? 11??0?10?? ????0??1?0 ?1110?? Gallinuloides 21?3111??? ??????11?? ?1?1?????? ??11?????0 ????0????? 2????21??? ???6?????? ????????2? 1111110000 020?111?01 ??121?1231 200001?1?? ?10????10? ??0??????1 ???11????? ?1?311??3? 11?1110110 11??1221?? ????????0? ??2???21?? ????????1? ?2???1???1 12?11????? ?0??010??0 ?11???? Gallus 1123111311 1211111111 1111111211 2111?10200 0001011?10 2110121111 0016012024 0202100020 1111111010 020?211000 0012101231 1010112201 1100111100 0301111111 0001100111 0113120132 1021011210 11??121110 1121101101 1121012110 1121101110 0222011121 1201120130 1322012010 0101112 Gansus ?????????? ?????????? ?????????? ?????????? ?????????1 21?1?20111 1004001024 ?20210000? 1111110010 020?3100?? 0012100230 210100?10? 11001??010 130?1???01 0011100111 ?0?312?011 10001?1210 10001321?0 0111101010 1121001100 1(12)?1101?10 0(12)2?0?0?21 1201110010 102?020000 011???? Gobipteryx 10(12)3101300 021?10???? ????0???0? 1??1?(01)0??? 10???10??? ???1?????? ???(012)10??(12)4 01???????? ?1111?010? 1???0??000 0??111(23)??? ?????????? 0??????0?? ????0????? ???11???11 1????????? 0??0?01?00 ??????20?? ?????????? ???10?11?? ?????????1 0(01)10?011?1 10010?100? ?11?0??1?1 ??????? Hesperornis 11231103?1 021011?111 111000111? 1?10100??1 00010101?0 2100121111 2004010?13 0202100010 ?0101?00?0 010?010??? 000200?21? 0??0111?00 ??????0??? ??1000000? ?????????? ?????????? ?????????? ???????100 0121101110 0121012110 2122201110 1221111121 120112?210 1322322010 2????0? Hollanda ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???1101100 0220020121 11000212(123)1 112(12)0?0001 ??????? Hongshanornis ?020?10??? ???????1?? ?????????? ????00???1 01??0????? ?????????? 1???????24 ???????01? 0111110010 ????(01)11??0 ?0121?12?? 2201???10? 110?????10 ???2????0? ???11????? ???31??00? 0??00?0110 1010101??? ???????0?? 01(12)???(12)1?? ?????????0 ?(12)???????1 120?0?00?0 ?0??0200?0 01111?? Iberomesornis ?????????? ?????????? ?????????? ?????????? ?????????? 0??1110??1 000001?0(12)4 01010???0? ?11???0?00 ?2??0????? ???11?(23)(12)(123)? ?????????? ????0????? ??1?0???11 1??11????? ?????????? ?????????? ?????????? ?????????? ??1??0???? ???0????01 ?0???????? 00?1000000 01??000??0 011???? Ichthyornis 21(12)???0??? ??????1111 11??1111?? ?01001???? 0021011111 (01)110120111 20?(34)?01024 01021000?? ?111111010 010?211010 0012?00230 0??1?12?01 1100110010 120210?101 0001100211 01?3121012 1010010?11 11????310? 01011??110 1121?12?10 1221101?10 0221110?21 12011202?0 1?21020000 0????0? Jeholornis (01)?23111??? ?????????0 ?????????? ???00????? 000?00?1?? 0????00??1 0000????01 0000?????? 01101?0000 01??110??? ??1??00(12)?? ?????????? ?000000000 0?0(01)00??01 011110?000 0012110010 0001000000 0010013000 0000011?10 1?010010?? ??0???0?0? ?0(01)0?10??1 100000000? ?00?0200?0 010?0?? Jianchangornis ?????????? ?????????? ?????????? ?????????? ?????????? 1?????010? 200(234)0????? ?????????? 0111110010 020?010??? ?0121?02(23)0 (23)1011??(01)?? 0?00000010 0100000001 ?0111????? 0???1??01? 0000000010 1010103??0 1?(01)??????? ??(12)?001??? ?????00??? 0??0?10??1 1(12)0?0000?? ????0100?0 0???0?? Jinzhouornis 0023111(12)?1 ??????00?? ?1???????? ???1?11??0 10??10???? ???0??0?11 10??????24 0(12)0(12)?000?? 0?00?????? ?????00??? ??000?02(12)1 0??0?1(012)10? 00000??021 020(01)0???11 ?0101??(01)?? ?0?01????0 1?00?00000 0021002??? ?????????? ??????(01)??0 12??10??10 0??0010??1 10000(01)00?? 0?1?0200?0 ?10???? Jixiangornis ?????????? ?????????? ?????????? ?????0???? ?0???????? ?????????? ????????01 ????????1? 011?????00 ????0????? ???00?(01)(12)(012)? ?????????? ?00????000 ????????0? ???10????? ?????????? ??(01)00?0100 00(01)?003??? ?????????? ?????????? ?????????? ?????????? ?0????00?? ?????(01)???? ?11?0?? Liaoningornis ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ???????(12)2? 0??1(12)??30? ?????????? ????????0? ????1????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? 110?001??? ?1(12)?0100?0 01(12)???? Limenavis ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??121?0001 000??00111 ???3121031 ?????10?10 ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Lithornis 21231113?? ?{01}1?01111? 11?0111211 ??11?1???0 00????1??0 211?121?11 2006??2?24 ?21210002? 1111111000 02??210001 ?0121?0230 0??021310? 110?111100 ??0?0???01 00?11????? ???31???31 11?1010??? ???????100 ??1??01?1? 012????1?0 2122201?10 ?2?2?1???1 1201120211 1???02?0?0 ??{01}???? Longicrusavis 10(12)01?0??? ?????????? ?????????? ????00???1 01??01???? 11?11?0??? 20???????? ?????????? ?1111100?0 ????(12)1100? ?01210?23? 120110?10? 110?01?110 1202110001 0001100??? 0??31110?? 0001010010 0010101??? ????11??1? ??(12)??0???? ?????01?10 022(01)121?11 12011100?? 10100100?0 011???? Longipteryx ?122111??? ?????????? ?????????? ???000???? 00??01?1?? 1011?????? ???2????24 ??0?01?11? 0111110100 ????000?00 0?111132(23)? 21101??20? ?0110??000 2??(01)?0?011 ?1?11????? 00?0110000 0100?01100 1000113000 0????11110 11(12)11010?0 ?(12)1?10???? 0????0?1?1 ?0?1000000 001?(13)20000 01(01)???? Longirostravis (01)022??1??? ?????????? ?????????? ???00????? 00??01?1?? 1?????0??? ??01????24 ??0?01?10? 0111????00 ?2??000?00 ??0111(123)2(123)? 221110?20? ?01??1??00 ???(01)?????? ???10????? ?0?31??10? 0?(01)0101?00 11?0122??0 ?????1??10 ?1?11????0 ?1??????1? 00?????1?1 1(01)?10000?? 0???0100?0 0?????? Neuquenornis ?????????? ?????????? ?????????? ?????????? ?????????? ??????0??? 11???????? ?????????? ?111????01 1111000??? ?1?1111230 (12)?1?1????? 0????11??? ??1?01?01? ???11?1??1 1??31??10? 0?(01)0001??? ?????????? ?????????? ?????????? 1110?????? ?1???????? 10??0?1??1 ?2?00?0110 01(12)???? Otogornis ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?11111???? ?????0??00 ?????????? ?????????? 0?1??10010 ???(01)?00011 11?11????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Parahesperornis 1123??0??? 0?10??1?11 1???00111? ???01????? ???????1?0 2100121111 200?????1? ????10001? ?0101?0??0 010?0????? ???????2?? ?????1???? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ????????10 2122201110 1221111??? 1201?2?210 1?22322000 2?????? Patagopteryx ?????????? ??????1?11 110001111? ?????????? ?0??000?11 2110110011 00031101?? 120??????? ?111110000 0?0?11100? 0??????2(12)? ???10????? 1001???100 0?0?000001 00?0000?0? 0????????? 0??1?1??0? 00???20?00 0100000111 0121?021?0 ??20????10 01?0?01111 1201010011 10000?00?0 001???? Pengornis 00(01)01101?0 ??????0??? ???0?1???? ???000???0 ?0?????11? 2??1??0?1? 10?1????24 0?0(12)?????? 01111???00 ?????0?001 ???11?2??? ?????????? 001?010010 1??(01)?100?1 ???11????? ?1(02)(23)111??? 0?01001?00 10?0?(12)3??? ?????????? ??????(01)0?0 1???????1? ?(01)?01(12)11?1 100?001001 01200101?0 0?????? Protopteryx (01)?(12)(02)1????? ?????????? ?????????? ???00????? ?00????1?? ?????10??? ??01????14 ????0??1?? ?1111?0?11 ?(12)??200?00 ??01113221 110?1??10? ??1????010 ?????????? ???11????? ????1??000 ??(01)0001000 000010???0 0????11??? ??????10?? ??1?????0? ?????????? 00??0000?? 00??0(01)01?0 01110?? Rahonavis ?????????? ?????????? ?????????? ?????????? ?????????1 ?0????0?10 20?0?0??0(0123) 0100?????? ??1??????? ?????0?000 000??????? ?????????? ?????????? ?????????? ????10?000 0????????? ?????????? ???????001 0000?11000 1101000001 1200100101 1100010021 000?000000 00000(01)0000 010???? Rapaxavis (01)022??1(012)?? ?????????? ?????????? ???000???0 ?0???1?1?? ???1??01?? 11?1???024 ??0?0??10? 011???0?00 ?(12)??0???0? ???11?3221 22111??20? ?0100??000 0??(01)0???11 11?10???1? ?0??11?00? 0100001200 11?0123000 0?0??11110 1?111?1000 ????????0? 0(01)?0?11??1 00?10000?? 002?0100?0 011???? Sapeornis 1010010(01)?0 ??????0010 ?1?0?????? ???1?0???? 00??0??1?? ??100(01)01?? 10010?0024 000000?00? 0000110000 00??000000 ??10002??? ?????????? ?00??00011 00000???01 00111????0 0??2110000 1000?00000 1010103000 0??0?11010 1111?01001 0??0100?10 00?0?111?1 1000000000 000?0000?0 011???? Schizooura 0123111(12)?? ?????????? ?????????? ??11?0???? 10??01??0? (12)1?00?00?1 ??0(345)?1??(12)(34) ?(12)0(12)?000?? 01111?0?10 01??(01)???0? ???11012(23)0 (12)1011??1?? 1?000??0(12)0 010(01)0???01 ?0?10????? 00?31??002 0?001?0200 1010103?0? ?1(01)1???010 1?1?0111?? ???(12)?0???? ?(12)???????1 1?010?0000 1(01)2?011000 010?1?? Shanweiniao (01)?(12)(23)??1??? ?????????? ?????????? ?????0???? 00??01???? ??1??????? ????????24 ???????1?? 01111???00 0(12)??000?00 ??011?22(123)? 211?(01)??20? ??1?????00 ????????11 ???11????1 ?????????? ???????(01)0? 11???22??? ??????1??? ???1??(12)?0? ????(01)0??1? ?????????1 10??0000?? ??1?(01)(01)?0?0 ?1(01)?1?? Shenqiornis 0(01)0101102? ???????0?? ????0?1??? ????000??? 000???1?1? ??11?0?01? ?11??????? ???0?????? ?11111?0?0 1?(12)??000?0 ???011?(23)2(123) ?(12)(12)1?1??20 ??01101?00 0????????? 1???11???? ????11??00 1010010110 0101011300 00??????01 ?111???10? ?????????0 ?????????? 00??0010?? ?2???(01)?0?0 ?1????? Shenzhouraptor ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? (01)???????0(12) ???0?????? 011??????0 ?????10?0? ??101?(01)??? ?????????? 0??????000 ?????????? ???10????? ???011000? 00(01)0000000 0010003??? ?????????? ??????1??? ????????0? 0????????? 00??0????0 ?0??0?0??0 000?0?? Songlingornis ???(01)?????? ?????????? ?????????? ???000???? ?0?????1?? ?????????? 2????????? ?????????? ?11?????10 1???2????? ???21?0230 12111??41? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ??????? Vegavis ?????????? ?????????? ?????????? ?????????? ?????????? 2????????? ???(56)?????? ?????????? ?1111?00?0 01??(01)10?00 ?????????? ?????????? 1?0??????? ?????????? ?????????? 1????????? ?????????? ???????01? ??1?????01 ??2??????0 112110??1? 02?2?1???? 12011???3? 1????1???0 ??????? Vescornis ?0?????(12)?? ?????????? ?????????? ???0000??? 00(12)001?1?? 21?1??0??? 1??2????2? ??????00?? 0111??0?01 ?(12)??000?00 ??011?3221 (12)??11??20? 00110??010 1?1(01)0???11 11111????? ?1(02)011010? 00(01)0?01200 10(01)01220?? 0????????? ?????????? ????????0? ?(01)???????? 00??0010?? 011?(01)201?1 011???? Vorona ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ?????????? ????????10 1120111?00 0111101111 1(12)00010001 1?21000000 ??????? Waimanu ?????????? ?????????? ???1??12?? ???1?1???? 00???????? ??????0?1? ???5?????? ?????????? ?1111?1?10 ?{01}??210?1? ??020?0??? ?????????? 1101??010? ??0?1?1101 ?0?01????? ???31???1? 1??0110??? ???????110 ???1?0???? 0????????0 22?2????1? ???2?1???? 12??12022? 1???00?0?0 ??????? Yanornis 10(12)1110??1 ????????1? ?????????? ??1000???1 ?00?01?1?? 0?????01?? 2003??0??? ?????????? 0111111010 0?0?210000 ??121?0230 1211(12)??41? 11001??010 110(01)????01 00011?0?11 ?0?3111000 0000010110 1010123101 00?11?1010 0?11?010?? 1???????1? 0??0??0??1 11011?00(01)? ?12?0100?0 011???? Yixianornis 1121?????? ?????????? ???0???1?1 ???0?0???1 10?????1?? 1?1??2011? 1003??0?24 ????1000(12)0 0111110010 010?210000 001210?230 1111?0?41? ?10??11??0 ?0?0?11001 ?0?100021? 0??3111012 100001?110 1010102100 ?1??00?01? ?11??01??? 1?2?101?10 0????????1 1(12)01?00011 10?0010??0 011?1?? Zhongjianornis 01?3??1??? ?????????? ?????????0 ?0?1?10??0 ?????????? ??????011? 1????????(34) ??01????11 ?????1???? ?????10?0? ?01110???? ?????????? 0?0??00020 ?????0000? ???11????? 0??2???001 100010?100 0000113?01 01?0?01?10 1?(12)??0???0 ?(12)2??0???? 0?(01)??????? ?(12)?1??0(01)00 ??????0??0 ?11???? Zhongornis ???3??1??? ?????????? ????0????? ???1?????? ?????????? ?????001?? 0??(01)????13 0?1??????? 01????0000 0???000??? ?00?0?(01)??? ?????????? ??0000?010 0????0000? ???00????? ?????0000? 0100?00000 0010001?00 ????????1? 1????????? ??(02)0(01)??00? 00?0??0??1 ?00?0?0000 00??0(12)00?0 011???? ; END; begin mrbayes; set autoclose=yes nowarn=yes; LOG START filename=h200_igr.screenlog; [Char 64 has 6 or more states cannot be ordered in Mrbayes; 32 characters were ordered in O'Connor et al. SI, not 31 as stated in their text] CTYPE ordered: 1 3 8 28 31 43 51 56 [64] 67 69-70 72 74 92 107 117 159 168 176 183 193 197 205 213-214 216 219 222 229 233-234; LSET coding=informative rates=gamma; OUTGROUP Dromaeosauridae; constraint root = 1-. ; constraint birds = 2-. ; constraint Avebrevicauda = 3-. ; [ingroup] CALIBRATE Dromaeosauridae =fixed(111); [oldest of the three exemplars - Deinonychus, Velociraptor, Dromaeosaurus - used for coding this taxon] CALIBRATE Archaeopteryx =fixed(150); CALIBRATE Ambiortus =fixed(130); CALIBRATE Anas =fixed(0); CALIBRATE Apsaravis =fixed(73); CALIBRATE Archaeorhynchus =fixed(120); CALIBRATE Baptornis_advenus =fixed(79); CALIBRATE Baptornis_varneri =fixed(77); CALIBRATE Boluochia =fixed(120); CALIBRATE Cathyaornis =fixed(120); CALIBRATE Changchengornis =fixed(125); CALIBRATE Chaoyangia =fixed(120); CALIBRATE Columba =fixed(0); CALIBRATE Concornis =fixed(124); CALIBRATE Confuciusornis_dui =fixed(126); CALIBRATE Confuciusornis_sanctus =fixed(125); CALIBRATE Crypturellus =fixed(0); CALIBRATE Didactylornis =fixed(120); [=Sapeornis chaoyangensis?] CALIBRATE Elsornis =fixed(77); CALIBRATE Enaliornis =fixed(102); CALIBRATE Eoalulavis =fixed(128); CALIBRATE Eocathayornis =fixed(120); CALIBRATE Eoconfuciusornis =fixed(131); CALIBRATE Eoenantiornis =fixed(125); CALIBRATE Gallinuloides =fixed(55); CALIBRATE Gallus =fixed(0); CALIBRATE Gansus =fixed(120); CALIBRATE Gobipteryx =fixed(72); CALIBRATE Hesperornis =fixed(79); CALIBRATE Hollanda =fixed(77); CALIBRATE Hongshanornis =fixed(125); CALIBRATE Iberomesornis =fixed(126); CALIBRATE Ichthyornis =fixed(85); CALIBRATE Jeholornis =fixed(120); CALIBRATE Jianchangornis =fixed(120); CALIBRATE Jinzhouornis =fixed(125); [=Confuciornis?] CALIBRATE Jixiangornis =fixed(125); CALIBRATE Liaoningornis =fixed(125); CALIBRATE Limenavis =fixed(71); CALIBRATE Lithornis =fixed(55.8); CALIBRATE Longicrusavis =fixed(122); CALIBRATE Longipteryx =fixed(120); CALIBRATE Longirostravis =fixed(122); CALIBRATE Neuquenornis =fixed(85); CALIBRATE Otogornis =fixed(123); CALIBRATE Parahesperornis =fixed(86); CALIBRATE Patagopteryx =fixed(77); CALIBRATE Pengornis =fixed(120); CALIBRATE Protopteryx =fixed(131); CALIBRATE Rahonavis =fixed(69); CALIBRATE Rapaxavis =fixed(120); CALIBRATE Sapeornis =fixed(120); CALIBRATE Schizooura =fixed(120); CALIBRATE Shanweiniao =fixed(122); CALIBRATE Shenqiornis =fixed(122); CALIBRATE Shenzhouraptor =fixed(120); [=Jeholornis?] CALIBRATE Songlingornis =fixed(120); CALIBRATE Vegavis =fixed(67); CALIBRATE Vescornis =fixed(122); CALIBRATE Vorona =fixed(69); CALIBRATE Waimanu =fixed(59); CALIBRATE Yanornis =fixed(120); CALIBRATE Yixianornis =fixed(120); CALIBRATE Zhongjianornis =fixed(120); CALIBRATE Zhongornis =fixed(122); PRSET brlenspr=clock:uniform; PRSET clockvarpr=igr; PRSET igrvarpr=exp(10); [default] PRSET clockratepr=normal(0.01,0.1); CALIBRATE root=uniform(150.1,200); PRSET topologypr = constraints(root, birds, Avebrevicauda); PRSET nodeagepr = calibrated; mcmcp temp=0.2 samplefreq=4000 printfr=4000 nruns=4 nchain=4 relburnin=yes burninfrac=0.25 ; mcmcp savebrlens=yes filename=h200_igr; mcmc ngen=40000000; sumt filename=h200_igr relburnin=yes burninfrac=0.25 contype=allcompat; sump filename=h200_igr relburnin=yes burninfrac=0.25; end;