Alignments of cox1 sequecnes of Uncinaria sanguinis =================================================== *.fas - file in plain FASTA format *.nex/pau - file in NEXUS format (e.g. for DnaSP, PAUP*) *.meg - file in MEGA format (e.g. for MEGA5/6) --------------------------------------------------- Sequences from Uncinaria sangunis: Dataset1to3.meg - all 56 parasites cox1 DHR.fas / .nex - alignment of 17 parasite cox1 from sea lions on the Dengerous Reef colony P.fas / .nex - single cox1 from a sea lion on the South Pages colony SBH.fas - alignment of 38 parasite cox1 from sea lions on the Seal Bay colony Dataset1.fas / .nex - alignment of 46 parasite cox1 from single all hosts except SBH09 / SBH20 Dataset2.fas / .nex - alignment of 5 parasite cox1 from a single host (SBH09) Dataset3.fas / .nex - alignment of 5 parasite cox1 from a single host (SBH20) SBH_woDataset2plus3.fas / .nex - alignment of 28 parasite cox1 from sea lions on the Seal Bay colony (sequences from SBH09 / SBH20 removed) Dataset1to3.fas / .nex - combined dataset 1 to 3 --------------------------------------------------- humans_Necator_americanus.pau - alignment of all cox1 sequences from Necator americanus (originaly from Hawdon et al. (2001) GenBank accession no. AF303135-AF303159); contains ID of randomly selected entries dogs_Ancylostoma_caninum.pau - alignment of all cox1 sequences from Necator americanus (originaly from Miranda et al. (2008) GenBank accession no. EF566762-EF566791); contains ID of randomly selected entries Necator_americanus_AF303135toAF303159.fas - alignment of GenBank accession no. AF303135-AF303159 split into individual sequences based on the original paper Ancylostoma_caninum_EF566762toEF566791 - alignment of GenBank accession no. AF303135-AF303159 split into individual sequences based on the original paper random.pl - a simple PERL code to select random sequences JS | 12/3/2014