Data files for Genome Biology and Evolution article: Kader A, Li Y, Dong K, et al. Population variation reveals independent selection towards small body size in Chinese Debao pony[J]. Genome biology and evolution, 2015: evv245. doi: 10.1093/gbe/evv245 Data files included: Single nucleotide polymorphism (SNP) raw data files with 65,157 loci for 96 Chinese horses in PLINK-format (please see Purcell et al. (2007) Am J Hum Genet, 81, 559-575). File 1. PED file: 96_Chinese_horse.ped File 2. MAP file: 96_Chinese_horse.map Sample identification, sample locations and population cluster membership for all individuals. File 3. Sample ID and locations for 96_Chinese_horse.xlsx