GENERAL-INFO-START seq-file A2c2_3spec.gphocs trace-file Out_2c2sp3d.log locus-mut-rate CONST mcmc-iterations 300000 iterations-per-log 500 logs-per-line 100 mcmc-sample-skip 10 find-finetunes TRUE tau-theta-print 1.0 tau-theta-alpha 1.0 # for STD/mean ratio of 100% mig-rate-print 1.0 mig-rate-alpha 1 mig-rate-beta 10 GENERAL-INFO-END CURRENT-POPS-START POP-START name Formosus samples 05_124_form_0 h 05_124_form_1 h 98_163_form_0 h 98_163_form_1 h D_1298_form_0 h D_1298_form_1 h D_1303_form_0 h D_1303_form_1 h D_1305_form_0 h D_1305_form_1 h theta-beta 1000 POP-END POP-START name Istmalleator samples 06_271_ist_0 h 98_52_ist_0 h 98_53_ist_0 h 98_54_ist_0 h 06_271_ist_1 h 98_52_ist_1 h 98_53_ist_1 h 98_54_ist_1 h theta-beta 1000 POP-END POP-START name Panamensis samples 06_709_pan_0 h D_1086_pan_0 h D_229_pan_0 h D_235_pan_0 h D_481_pan_0 h 06_709_pan_1 h D_1086_pan_1 h D_229_pan_1 h D_235_pan_1 h D_481_pan_1 h theta-beta 1000 POP-END POP-START name Columbiensis samples 98_122_col_0 h 98_123_col_0 h C328_F175_col_0 h C330_F177_col_0 h 98_122_col_1 h 98_123_col_1 h C328_F175_col_1 h C330_F177_col_1 h theta-beta 1000 POP-END POP-START name Malleator samples 98_216_mal_0 h 98_217_mal_0 h 98_216_mal_1 h 98_217_mal_1 h theta-beta 1000 POP-END POP-START name Estuariensis samples 98_308_est_0 h F_461_est_0 h F_463_est_0 h F_470_est_0 h 98_308_est_1 h F_461_est_1 h F_463_est_1 h F_470_est_1 h theta-beta 1000 POP-END CURRENT-POPS-END ANCESTRAL-POPS-START POP-START name IstMall children Malleator Istmalleator tau-initial 0.003 tau-beta 300.0 theta-beta 1000 # finetune-tau 0.0000008 POP-END POP-START name EstCol children Estuariensis Columbiensis tau-initial 0.003 tau-beta 300.0 theta-beta 1000 # finetune-tau 0.0000008 POP-END POP-START name PanForm children Panamensis Formosus tau-initial 0.003 tau-beta 300.0 theta-beta 1000 # finetune-tau 0.0000008 POP-END POP-START name PFIM children PanForm IstMall tau-initial 0.01 tau-beta 100.0 theta-beta 1000 # finetune-tau 0.0000008 POP-END POP-START name root children PFIM EstCol tau-initial 0.01 tau-beta 100.0 theta-beta 1000 # finetune-tau 0.0000008 POP-END ANCESTRAL-POPS-END