a) ################################################ #NEXUS begin taxa; dimensions ntax=65; taxlabels 32Sye33Ab 31Sye23Ba 24Pa7367 64BS6Pseudan 63BS5Pseudan 65BS7Pseudan 68Prochlorot 27Sye6301 10Cb6307 29Sye9311 30Sye9605 33Sye8102 48Nodosiline 62BS4Geitler 60BS2Leptoly 16Geitlerine 67Oscillator 45Mvagi 35Trichodesm 36Amaxima 04Aplatensis 69Planktothr 07Chr7203 59BS1Chroocc 66BS8Pseudan 58Mastigocla 53Chlorogloe 54Chl9212 55Ftherma 56Fs7414 57Fs9339 51Nodularia 23Nsp7120 03Ana29413 46Microchaet 14Cdstagnale 50Cylindrosp 22Na0708 02Ana7122 05Cth6303 06Cha6605 08Cri9333 15Dactylococ 18Halothece 38SpSubsalsa 25Sc6803 19Ll7376 28Sye7002 11Cb10605 09Cb7202 12Ct7424 21MaNIES843 13Ct8801 40Chrocospha 41Gloeocapsa 26Staniera 42Xenococcus 61BS3Symploc 47Moorea 44Mch7420 20Mc7113 34Thermosyne 01Achlmarina 39AchlAFEJ01 17Gb7412 ; end; begin trees; tree tree_1 = [&R] (((((((((((((((((19Ll7376:0.14943196813359583,28Sye7002:0.1097078218889247):0.22862274131323101,(11Cb10605:0.17076088066100326,09Cb7202:0.1899728880106868):0.17561963831435612):0.03460241286492627,25Sc6803:0.3479350467898802):0.04332724214980688,((12Ct7424:0.17964084490688248,21MaNIES843:0.2561617646991896):0.031651019534847835,(13Ct8801:0.12942209511060543,40Chrocospha:0.2039020462230996):0.07951854999074026):0.037613387524781716):0.021481092643230837,((26Staniera:0.1405306222338797,42Xenococcus:0.24078016179171413):0.08331863871940448,41Gloeocapsa:0.3340779165969058):0.022069604005439558):0.04221442140552234,((15Dactylococ:0.10284064559356376,18Halothece:0.08646761250568202):0.25920327621178263,38SpSubsalsa:0.2674680794228246):0.03772636865199952):0.07053981197766457,(((61BS3Symploc:0.1486371580284528,47Moorea:0.1984980575554579):0.02649549354641534,44Mch7420:0.17416716873962235):0.018013749195306628,20Mc7113:0.1405162430683431):0.06003172019352554):0.02665900744665839,(06Cha6605:0.4003830948752807,08Cri9333:0.16490344764724674):0.062091683028585365):0.0169143820480242,((((((((50Cylindrosp:0.1987569647443579,22Na0708:0.07051147594042717):0.028439201473242526,02Ana7122:0.054454155904305135):0.050103577887934514,14Cdstagnale:0.07426353519860251):0.026681823257179382,46Microchaet:0.11064932776677161):0.011896658790070846,((23Nsp7120:0.017633086337332515,03Ana29413:0.01329334703363716):0.07859856592801429,51Nodularia:0.11130023025767877):0.015727083185682722):0.03655715278813765,05Cth6303:0.22146670096301635):0.016482641547760246,((((55Ftherma:0.02021141962887707,56Fs7414:0.014418072253426839):0.020264631968970548,57Fs9339:0.04790341495211903):0.05172954444145461,(53Chlorogloe:2.4246058152965766E-4,54Chl9212:9.169766694098191E-4):0.07444880459449299):0.04685068148031146,58Mastigocla:0.11442468445901732):0.017497836127906674):0.07943765725581065,((07Chr7203:0.007016422127736122,59BS1Chroocc:0.004984094565366415):0.01356581896097131,66BS8Pseudan:0.018921391866662862):0.17911980014084705):0.07001527091901383):0.019856474504159838,((((36Amaxima:0.022827934889592894,04Aplatensis:0.01740877882816605):0.1893365963963678,69Planktothr:0.19037884138089256):0.06268816697181956,35Trichodesm:0.28339502090452373):0.03812048833395276,(67Oscillator:0.01836522377802141,45Mvagi:0.02046790388109243):0.19894992797877364):0.05718421806220064):0.04016274329111469,(60BS2Leptoly:0.27227258974213453,16Geitlerine:0.2179153953570261):0.03202323939735141):0.02449130689492507,(48Nodosiline:0.34124441753605494,62BS4Geitler:0.22787376695787454):0.05147295199499213):0.02895165173298464,(((((30Sye9605:0.11057047425676791,33Sye8102:0.10678622285817285):0.09708960597164529,29Sye9311:0.1858865616253773):0.14777260552541116,10Cb6307:0.2208250836647876):0.6561568772790576,27Sye6301:0.2726848959634742):0.11026176511970798,68Prochlorot:0.3365796283059117):0.0829238996837196):0.028870763787426812,((01Achlmarina:0.01415397538631491,39AchlAFEJ01:0.014274875286846678):0.3281318391896333,34Thermosyne:0.4298052804488679):0.06143052962804574):0.07082718793740006,(((63BS5Pseudan:0.1762253418995523,65BS7Pseudan:0.2526234372196068):0.07266814893524898,64BS6Pseudan:0.28210728197548196):0.04656128466954801,24Pa7367:0.29179866592502046):0.17371902057308608):0.13671409010935243,(32Sye33Ab:0.0525320244751768,31Sye23Ba:0.050906185280291005):0.43076930937223845):0.33954783422306317,17Gb7412:0.3395478342230633); end; ################################################ b) ################################################ #NEXUS begin taxa; dimensions ntax=65; taxlabels 31Sye23 32Sye33 24Pa736 63BS5Ps 65BS7Ps 64BS6Ps 06Cha66 05Cth63 54Chl92 53Chlor 14Cdsta 51Nodul 50Cylin 22Na070 02Ana71 46Micro 23Nsp71 03Ana29 58Masti 55Fther 56Fs741 57Fs933 66BS8Ps 07Chr72 59BS1Ch 08Cri93 35Trich 45Mvagi 67Oscil 36Amaxi 04Aplat 69Plank 20Mc711 47Moore 44Mch74 61BS3Sy 38SpSub 41Gloeo 15Dacty 18Halot 19Ll737 28Sye70 40Chroc 26Stani 42Xenoc 09Cb720 11Cb106 12Ct742 13Ct880 25Sc680 21MaNIE 16Geitl 62BS4Ge 60BS2Le 68Proch 27Sye63 10Cb630 29Sye93 33Sye81 30Sye96 48Nodos 34Therm 01Achlm 39AchlA 17Gb741 ; end; begin trees; tree tree_1 = [&R] ((((((((((((((26Stani:0.058085377371361935,42Xenoc:0.07091611638706968):0.022082439640398632,(09Cb720:0.06034497334022387,11Cb106:0.06861805896589712):0.1387194391109967):0.018366446606871117,((19Ll737:0.03588450438310026,28Sye70:0.018903010299374856):0.07842353319463768,40Chroc:0.07241830380322628):0.015900721004533575):0.009794091044703745,(15Dacty:0.051524832852980484,18Halot:0.04225138686052349):0.13841923973405687):0.029907887800895733,((12Ct742:0.1169036832455786,13Ct880:0.05507038913314011):0.013062413276718698,(25Sc680:0.08954990625816217,21MaNIE:0.10691149301331054):0.025916167914335375):0.01184635397893763):0.013874209669803184,(38SpSub:0.12491471340995608,41Gloeo:0.11831513759877627):0.015621972788406324):0.02480226414392256,(((47Moore:0.1040071179485128,44Mch74:0.06015434386858837):0.013461274813838964,61BS3Sy:0.054279919991712056):0.01583287750450696,20Mc711:0.09796938952294348):0.02683615466583339):0.01207993415688724,((((36Amaxi:0.0027441744199451223,04Aplat:0.0036888211515873626):0.05588900781560885,69Plank:0.11419892284586758):0.031305967409952284,(45Mvagi:0.002496195923332556,67Oscil:0.002577729370204118):0.09628461602909183):0.007696310881529056,35Trich:0.10434812366147034):0.028130368051974886):0.010200512826127273,((((((((((50Cylin:0.08049536933251394,22Na070:0.02037297102560015):0.012274480689227873,02Ana71:0.02888444214208824):0.00867576835355005,((23Nsp71:0.008097205138113905,03Ana29:0.012655805204855597):0.01901871867180227,46Micro:0.04360105432941136):0.01189291632630507):0.004600949600104043,51Nodul:0.04850088705605826):0.007142072840039426,14Cdsta:0.03783393036066629):0.04040311037794328,(((55Fther:0.01949619194808272,56Fs741:0.02005235168140479):0.03333567349775951,57Fs933:0.040281424922784415):0.047147945793605345,58Masti:0.07628791148348898):0.007723595692840535):0.022583627567496017,((54Chl92:1.0650941073553355E-6,53Chlor:1.0650941073553355E-6):0.06727130515423863,05Cth63:0.116191789299887):0.015191114003733297):0.03128232471046627,((07Chr72:0.0015046121255081202,59BS1Ch:0.0048504114118722574):0.017147888628755437,66BS8Ps:0.024730034126420553):0.16173176952886986):0.01850820138496062,08Cri93:0.10372742334494711):0.02025910283395127,06Cha66:0.14506078721399585):0.012157820562062438):0.021038942720424447,16Geitl:0.07629079103789105):0.009968051282045476,(((((((((33Sye81:0.006514748289480565,30Sye96:0.010425260848982154):0.01052768002130855,29Sye93:0.009267140873976065):0.0274643744733159,10Cb630:0.021421685874779772):0.09602837791019692,27Sye63:0.05876455589196905):0.014196675681399373,68Proch:0.13758047146136998):0.021361125388673297,48Nodos:0.09281617050353458):0.013752497068080682,34Therm:0.09597358936985445):0.00991562020215403,(01Achlm:0.0021559339087142138,39AchlA:0.0054203040526481505):0.0834565369109293):0.009479114218831242,(62BS4Ge:0.07378090461482506,60BS2Le:0.12078095448378717):0.02855800699290928):0.012838294060212418):0.02011247937047833,(((63BS5Ps:0.054240107894600986,65BS7Ps:0.05976157704620372):0.020614382092045858,64BS6Ps:0.07430990193276216):0.048848197456200226,24Pa736:0.08885349602905862):0.06221753015919229):0.06263203735573897,(31Sye23:0.025391941795656237,32Sye33:0.0323509986234351):0.13543346252394095):0.07317160261290007,17Gb741:0.07317160261290007); end; ################################################ c) ################################################ #NEXUS #Hypothesis 1(a) BEGIN TREES; UTREE 1 = (17Gb7412: 32.690768, ((32Sye33A: 4.015060, 31Sye23B: 4.015060) [&95%={1.326, 9.256}]: 25.679270, ((24Pa7367: 16.781224, (64BS6Pse: 12.801577, (63BS5Pse: 8.146932, 65BS7Pse: 8.146932) [&95%={3.693, 14.402}]: 4.654645) [&95%={7.503, 18.622}]: 3.979647) [&95%={10.800, 21.574}]: 7.623940, ((34Thermo: 17.501466, (01Achlma: 1.205514, 39AchlAF: 1.205514) [&95%={0.372, 2.971}]: 16.295952) [&95%={9.947, 22.119}]: 6.097992, ((68Prochl: 19.883532, (27Sye630: 16.755761, (10Cb6307: 11.036173, (29Sye931: 7.467414, (30Sye960: 4.284710, 33Sye810: 4.284710) [&95%={1.762, 7.867}]: 3.182704) [&95%={4.211, 11.329}]: 3.568759) [&95%={6.937, 15.040}]: 5.719588) [&95%={13.235, 20.129}]: 3.127771) [&95%={16.538, 22.215}]: 3.176782, ((48Nodosi: 16.258942, 62BS4Gei: 16.258942) [&95%={7.944, 21.206}]: 6.259571, ((60BS2Lep: 16.878918, 16Geitle: 16.878918) [&95%={9.061, 21.100}]: 5.077827, (((67Oscill: 1.700985, 45Mvagi_: 1.700985) [&95%={0.570, 4.297}]: 15.063069, (35Tricho: 13.409538, (69Plankt: 9.247415, (36Amaxim: 1.559500, 04Aplate: 1.559500) [&95%={0.553, 3.663}]: 7.687915) [&95%={4.711, 14.831}]: 4.162123) [&95%={8.405, 17.920}]: 3.354516) [&95%={11.874, 20.567}]: 4.600736, (((66BS8Pse: 1.767827, (07Chr720: 0.502013, 59BS1Chr: 0.502013) [&95%={0.165, 1.196}]: 1.265814) [&95%={0.707, 4.162}]: 18.893399, ((58Mastig: 15.633273, ((53Chloro: 0.046544, 54Chl921: 0.046544) [&95%={0.014, 0.113}]: 8.394316, (57Fs9339: 3.469935, (55Ftherm: 1.439690, 56Fs7414: 1.439690) [&95%={0.476, 3.396}]: 2.030246) [&95%={1.474, 7.388}]: 4.970925) [&95%={3.772, 14.607}]: 7.192412) [&95%={8.840, 19.091}]: 4.028504, (05Cth630: 16.933066, ((51Nodula: 9.722524, (23Nsp712: 1.396909, 03Ana294: 1.396909) [&95%={0.438, 3.568}]: 8.325615) [&95%={4.828, 14.532}]: 2.768334, (46Microc: 10.988722, (14Cdstag: 8.615686, (02Ana712: 5.849577, (50Cylind: 4.105089, 22Na0708: 4.105089) [&95%={1.908, 8.339}]: 1.744488) [&95%={3.139, 9.988}]: 2.766109) [&95%={5.117, 12.859}]: 2.373036) [&95%={6.833, 15.193}]: 1.502136) [&95%={8.055, 16.635}]: 4.442208) [&95%={12.446, 19.172}]: 2.728711) [&95%={19.208, 20.261}]: 0.999449) [&95%={20.068, 21.331}]: 0.525880, ((06Cha660: 14.203001, 08Cri933: 14.203001) [&95%={8.159, 18.681}]: 5.938243, ((20Mc7113: 14.001363, (44Mch742: 11.739195, (61BS3Sym: 8.961589, 47Moorea: 8.961589) [&95%={4.103, 14.103}]: 2.777606) [&95%={6.460, 16.604}]: 2.262168) [&95%={8.683, 18.338}]: 4.978147, ((38SpSubs: 13.731304, (15Dactyl: 5.564934, 18Haloth: 5.564934) [&95%={2.023, 10.788}]: 8.166370) [&95%={8.357, 17.505}]: 3.621149, ((41Gloeoc: 12.974652, (26Stanie: 8.222435, 42Xenoco: 8.222435) [&95%={4.456, 12.746}]: 4.752217) [&95%={9.006, 16.441}]: 2.804106, (((12Ct7424: 8.814451, 21MaNIES: 8.814451) [&95%={4.506, 12.900}]: 3.003629, (13Ct8801: 7.280032, 40Chroco: 7.280032) [&95%={3.581, 11.864}]: 4.538049) [&95%={7.634, 15.404}]: 2.608636, (25Sc6803: 12.428040, ((19Ll7376: 5.271967, 28Sye700: 5.271967) [&95%={2.418, 9.330}]: 5.247711, (11Cb1060: 6.123528, 09Cb7202: 6.123528) [&95%={2.887, 9.853}]: 4.396150) [&95%={7.319, 13.530}]: 1.908362) [&95%={9.148, 15.379}]: 1.998677) [&95%={11.010, 17.126}]: 1.352042) [&95%={12.441, 18.161}]: 1.573695) [&95%={14.180, 19.319}]: 1.627057) [&95%={16.456, 20.443}]: 1.161734) [&95%={18.311, 21.356}]: 1.045863) [&95%={20.412, 22.162}]: 0.177684) [&95%={20.586, 22.341}]: 0.591955) [&95%={21.112, 22.960}]: 0.561769) [&95%={21.568, 23.427}]: 0.541801) [&95%={22.035, 23.862}]: 0.539144) [&95%={22.703, 24.277}]: 0.805706) [&95%={23.674, 25.005}]: 5.289166) [&95%={25.769, 35.460}]: 2.996437) [&95%={26.849, 38.136}]; END; ############### #NEXUS #Hypothesis 1(b) BEGIN TREES; UTREE 1 = (17Gb7412: 34.229699, ((32Sye33A: 3.719569, 31Sye23B: 3.719569) [&95%={1.576, 7.957}]: 28.087400, ((24Pa7367: 17.093799, (64BS6Pse: 13.203950, (63BS5Pse: 8.795524, 65BS7Pse: 8.795524) [&95%={4.062, 15.172}]: 4.408426) [&95%={7.511, 19.867}]: 3.889849) [&95%={10.805, 23.443}]: 9.665373, ((34Thermo: 19.585483, (01Achlma: 1.062264, 39AchlAF: 1.062264) [&95%={0.415, 2.298}]: 18.523219) [&95%={11.492, 25.123}]: 6.297135, ((68Prochl: 21.536524, (27Sye630: 17.725214, (10Cb6307: 11.186569, (29Sye931: 7.524526, (30Sye960: 4.277594, 33Sye810: 4.277594) [&95%={2.055, 7.472}]: 3.246932) [&95%={4.432, 11.166}]: 3.662043) [&95%={7.413, 15.053}]: 6.538645) [&95%={13.679, 22.089}]: 3.811310) [&95%={17.702, 25.153}]: 3.478819, ((48Nodosi: 17.510455, 62BS4Gei: 17.510455) [&95%={9.501, 23.303}]: 6.274041, ((60BS2Lep: 18.283268, 16Geitle: 18.283268) [&95%={11.277, 22.892}]: 4.267429, (((67Oscill: 1.537151, 45Mvagi_: 1.537151) [&95%={0.601, 3.253}]: 14.619075, (35Tricho: 12.810196, (69Plankt: 8.956192, (36Amaxim: 1.544405, 04Aplate: 1.544405) [&95%={0.618, 3.292}]: 7.411786) [&95%={4.905, 13.631}]: 3.854005) [&95%={8.226, 17.293}]: 3.346030) [&95%={11.458, 20.554}]: 4.996560, (((66BS8Pse: 1.587803, (07Chr720: 0.456024, 59BS1Chr: 0.456024) [&95%={0.183, 0.985}]: 1.131779) [&95%={0.733, 3.098}]: 15.481388, ((58Mastig: 11.452166, ((53Chloro: 0.041984, 54Chl921: 0.041984) [&95%={0.015, 0.097}]: 6.892030, (57Fs9339: 2.997683, (55Ftherm: 1.267564, 56Fs7414: 1.267564) [&95%={0.489, 2.552}]: 1.730119) [&95%={1.441, 5.502}]: 3.936331) [&95%={3.587, 11.709}]: 4.518153) [&95%={6.702, 16.245}]: 2.361228, (05Cth630: 13.733001, ((51Nodula: 8.538709, (23Nsp712: 1.275852, 03Ana294: 1.275852) [&95%={0.461, 2.832}]: 7.262856) [&95%={4.707, 13.013}]: 2.033709, (46Microc: 9.406625, (14Cdstag: 7.626655, (02Ana712: 5.323010, (50Cylind: 3.801380, 22Na0708: 3.801380) [&95%={1.879, 6.884}]: 1.521630) [&95%={3.102, 8.904}]: 2.303645) [&95%={4.816, 11.756}]: 1.779970) [&95%={6.148, 13.716}]: 1.165793) [&95%={7.010, 14.945}]: 3.160583) [&95%={8.891, 18.157}]: 0.080394) [&95%={8.939, 18.261}]: 3.255797) [&95%={12.719, 20.669}]: 3.094254, ((06Cha660: 12.964173, 08Cri933: 12.964173) [&95%={7.311, 18.117}]: 6.132668, ((20Mc7113: 12.798744, (44Mch742: 10.820481, (61BS3Sym: 8.408761, 47Moorea: 8.408761) [&95%={4.897, 12.421}]: 2.411719) [&95%={6.963, 14.842}]: 1.978263) [&95%={8.671, 16.690}]: 4.989576, ((38SpSubs: 12.502524, (15Dactyl: 5.003295, 18Haloth: 5.003295) [&95%={2.177, 8.897}]: 7.499229) [&95%={7.974, 16.127}]: 3.358828, ((41Gloeoc: 12.092620, (26Stanie: 8.043102, 42Xenoco: 8.043102) [&95%={4.610, 11.926}]: 4.049518) [&95%={8.796, 15.254}]: 2.223823, (((12Ct7424: 8.278044, 21MaNIES: 8.278044) [&95%={5.032, 11.772}]: 2.455187, (13Ct8801: 6.879979, 40Chroco: 6.879979) [&95%={3.593, 10.479}]: 3.853251) [&95%={7.762, 13.791}]: 2.369280, (25Sc6803: 11.280265, ((19Ll7376: 4.779197, 28Sye700: 4.779197) [&95%={2.378, 7.730}]: 4.749501, (11Cb1060: 5.525459, 09Cb7202: 5.525459) [&95%={2.855, 8.470}]: 4.003240) [&95%={7.009, 12.327}]: 1.751566) [&95%={8.765, 13.999}]: 1.822246) [&95%={10.641, 15.711}]: 1.213932) [&95%={11.792, 16.955}]: 1.544909) [&95%={13.169, 18.550}]: 1.926967) [&95%={15.194, 20.655}]: 1.308522) [&95%={16.595, 21.947}]: 1.066604) [&95%={17.703, 23.080}]: 0.989340) [&95%={18.595, 24.138}]: 1.397912) [&95%={19.962, 25.579}]: 1.233798) [&95%={21.196, 26.816}]: 1.230847) [&95%={22.702, 27.990}]: 0.867276) [&95%={23.726, 28.852}]: 0.876553) [&95%={24.552, 29.813}]: 5.047798) [&95%={27.891, 36.479}]: 2.422729) [&95%={29.745, 38.243}]; END; ############### #NEXUS #Hypothesis 2(c) BEGIN TREES; UTREE 1 = (17Gb7412: 36.928959, ((32Sye33A: 4.748154, 31Sye23B: 4.748154) [&95%={1.872, 9.760}]: 31.000443, ((24Pa7367: 20.550882, (64BS6Pse: 15.977041, (63BS5Pse: 10.741661, 65BS7Pse: 10.741661) [&95%={5.349, 16.830}]: 5.235380) [&95%={10.071, 22.940}]: 4.573841) [&95%={14.327, 27.420}]: 11.489062, ((34Thermo: 22.363637, (01Achlma: 1.337506, 39AchlAF: 1.337506) [&95%={0.511, 2.845}]: 21.026131) [&95%={12.350, 28.953}]: 8.020688, ((68Prochl: 24.968020, (27Sye630: 20.574151, (10Cb6307: 13.186203, (29Sye931: 8.848781, (30Sye960: 4.896693, 33Sye810: 4.896693) [&95%={2.492, 8.629}]: 3.952089) [&95%={5.298, 13.808}]: 4.337421) [&95%={8.627, 19.043}]: 7.387948) [&95%={15.611, 24.851}]: 4.393869) [&95%={19.897, 28.372}]: 4.258409, ((48Nodosi: 20.578096, 62BS4Gei: 20.578096) [&95%={11.993, 26.868}]: 7.263637, ((60BS2Lep: 21.691939, 16Geitle: 21.691939) [&95%={13.150, 27.072}]: 5.945501, (((67Oscill: 1.904340, 45Mvagi_: 1.904340) [&95%={0.741, 4.338}]: 18.214378, (35Tricho: 16.164583, (69Plankt: 11.260326, (36Amaxim: 1.848312, 04Aplate: 1.848312) [&95%={0.728, 3.961}]: 9.412014) [&95%={6.241, 17.029}]: 4.904257) [&95%={11.307, 21.224}]: 3.954135) [&95%={15.180, 24.811}]: 5.863108, (((66BS8Pse: 1.865734, (07Chr720: 0.562822, 59BS1Chr: 0.562822) [&95%={0.217, 1.226}]: 1.302913) [&95%={0.891, 3.715}]: 20.597842, ((58Mastig: 16.454960, ((53Chloro: 0.051172, 54Chl921: 0.051172) [&95%={0.020, 0.115}]: 9.549778, (57Fs9339: 3.998893, (55Ftherm: 1.625652, 56Fs7414: 1.625652) [&95%={0.649, 3.466}]: 2.373241) [&95%={2.014, 7.469}]: 5.602057) [&95%={5.125, 15.134}]: 6.854010) [&95%={10.879, 19.560}]: 3.549068, (05Cth630: 17.738273, ((51Nodula: 11.494677, (23Nsp712: 1.529050, 03Ana294: 1.529050) [&95%={0.581, 3.470}]: 9.965627) [&95%={7.116, 15.428}]: 2.482592, (46Microc: 12.465184, (14Cdstag: 10.098304, (02Ana712: 7.220839, (50Cylind: 5.150062, 22Na0708: 5.150062) [&95%={2.584, 8.465}]: 2.070777) [&95%={4.181, 10.544}]: 2.877465) [&95%={6.828, 13.720}]: 2.366880) [&95%={8.942, 15.883}]: 1.512085) [&95%={10.456, 17.210}]: 3.761004) [&95%={14.607, 19.899}]: 2.265755) [&95%={19.337, 21.451}]: 2.459548) [&95%={20.707, 24.561}]: 2.370892, ((06Cha660: 16.654984, 08Cri933: 16.654984) [&95%={9.536, 21.868}]: 6.859706, ((20Mc7113: 15.951760, (44Mch742: 13.516137, (61BS3Sym: 10.420031, 47Moorea: 10.420031) [&95%={5.566, 15.509}]: 3.096106) [&95%={8.425, 18.110}]: 2.435623) [&95%={10.724, 20.261}]: 6.005208, ((38SpSubs: 15.975408, (15Dactyl: 6.512563, 18Haloth: 6.512563) [&95%={2.948, 11.234}]: 9.462845) [&95%={11.638, 19.541}]: 3.774740, ((41Gloeoc: 15.075232, (26Stanie: 9.726125, 42Xenoco: 9.726125) [&95%={5.328, 14.314}]: 5.349106) [&95%={11.090, 18.497}]: 2.831308, (((12Ct7424: 10.232453, 21MaNIES: 10.232453) [&95%={6.341, 14.136}]: 3.295409, (13Ct8801: 8.667203, 40Chroco: 8.667203) [&95%={4.685, 12.900}]: 4.860658) [&95%={10.165, 16.789}]: 2.875403, (25Sc6803: 14.132751, ((19Ll7376: 6.068005, 28Sye700: 6.068005) [&95%={3.118, 9.855}]: 5.898967, (11Cb1060: 6.942010, 09Cb7202: 6.942010) [&95%={3.691, 10.457}]: 5.024962) [&95%={8.874, 15.196}]: 2.165778) [&95%={11.034, 17.117}]: 2.270514) [&95%={13.554, 19.172}]: 1.503275) [&95%={15.099, 20.553}]: 1.843610) [&95%={17.167, 22.364}]: 2.206819) [&95%={19.350, 24.411}]: 1.557722) [&95%={21.187, 25.862}]: 1.319778) [&95%={22.839, 26.970}]: 1.147358) [&95%={23.748, 28.209}]: 1.655614) [&95%={25.201, 29.800}]: 0.204293) [&95%={25.387, 30.020}]: 1.384696) [&95%={26.897, 31.364}]: 1.157896) [&95%={27.972, 32.247}]: 1.655619) [&95%={29.582, 33.518}]: 3.708652) [&95%={32.897, 37.970}]: 1.180363) [&95%={33.989, 38.447}]; END; ############### #NEXUS #Hypothesis 2(d) BEGIN TREES; UTREE 1 = (17Gb7412: 37.139389, ((32Sye33A: 4.549535, 31Sye23B: 4.549535) [&95%={1.985, 9.601}]: 31.565539, ((24Pa7367: 20.684075, (64BS6Pse: 16.211409, (63BS5Pse: 10.956266, 65BS7Pse: 10.956266) [&95%={5.924, 17.144}]: 5.255142) [&95%={10.347, 22.504}]: 4.472666) [&95%={14.402, 27.086}]: 11.811496, ((34Thermo: 23.206911, (01Achlma: 1.274914, 39AchlAF: 1.274914) [&95%={0.541, 2.653}]: 21.931996) [&95%={13.944, 29.279}]: 7.664397, ((68Prochl: 25.585146, (27Sye630: 21.391729, (10Cb6307: 13.691578, (29Sye931: 9.232969, (30Sye960: 5.228424, 33Sye810: 5.228424) [&95%={2.812, 8.475}]: 4.004545) [&95%={6.029, 13.065}]: 4.458609) [&95%={9.727, 17.996}]: 7.700150) [&95%={17.345, 25.441}]: 4.193417) [&95%={21.741, 28.566}]: 4.046355, ((48Nodosi: 21.441680, 62BS4Gei: 21.441680) [&95%={13.132, 26.588}]: 6.688557, ((60BS2Lep: 21.841650, 16Geitle: 21.841650) [&95%={14.609, 26.196}]: 4.981470, (((67Oscill: 1.743596, 45Mvagi_: 1.743596) [&95%={0.728, 3.693}]: 17.979825, (35Tricho: 16.016531, (69Plankt: 11.463273, (36Amaxim: 1.721710, 04Aplate: 1.721710) [&95%={0.766, 3.450}]: 9.741563) [&95%={6.971, 16.768}]: 4.553258) [&95%={11.407, 20.586}]: 3.706890) [&95%={14.841, 23.944}]: 5.747870, (((66BS8Pse: 1.831171, (07Chr720: 0.530240, 59BS1Chr: 0.530240) [&95%={0.237, 1.074}]: 1.300931) [&95%={0.920, 3.514}]: 20.319381, ((58Mastig: 16.468775, ((53Chloro: 0.050140, 54Chl921: 0.050140) [&95%={0.021, 0.100}]: 9.478211, (57Fs9339: 3.876557, (55Ftherm: 1.600534, 56Fs7414: 1.600534) [&95%={0.726, 3.159}]: 2.276023) [&95%={2.076, 7.017}]: 5.651794) [&95%={5.044, 14.809}]: 6.940424) [&95%={11.172, 19.144}]: 3.366198, (05Cth630: 17.561616, ((51Nodula: 11.292468, (23Nsp712: 1.437120, 03Ana294: 1.437120) [&95%={0.633, 2.976}]: 9.855349) [&95%={7.055, 15.265}]: 2.296947, (46Microc: 12.161244, (14Cdstag: 9.883080, (02Ana712: 6.954882, (50Cylind: 4.996911, 22Na0708: 4.996911) [&95%={2.843, 8.145}]: 1.957971) [&95%={4.381, 10.047}]: 2.928198) [&95%={6.843, 13.308}]: 2.278165) [&95%={8.987, 15.421}]: 1.428171) [&95%={10.372, 16.879}]: 3.972200) [&95%={14.620, 19.497}]: 2.273357) [&95%={19.299, 20.803}]: 2.315580) [&95%={20.809, 23.783}]: 2.230320, ((06Cha660: 16.359245, 08Cri933: 16.359245) [&95%={9.157, 21.024}]: 6.729969, ((20Mc7113: 15.542083, (44Mch742: 13.236522, (61BS3Sym: 10.282326, 47Moorea: 10.282326) [&95%={5.240, 14.972}]: 2.954197) [&95%={7.911, 17.372}]: 2.305560) [&95%={10.023, 19.579}]: 6.073272, ((38SpSubs: 15.781447, (15Dactyl: 6.406436, 18Haloth: 6.406436) [&95%={3.200, 10.846}]: 9.375011) [&95%={11.626, 19.362}]: 3.728776, ((41Gloeoc: 15.038302, (26Stanie: 9.760903, 42Xenoco: 9.760903) [&95%={5.738, 13.691}]: 5.277399) [&95%={11.640, 18.198}]: 2.650907, (((12Ct7424: 10.367636, 21MaNIES: 10.367636) [&95%={6.794, 13.864}]: 2.996507, (13Ct8801: 8.569354, 40Chroco: 8.569354) [&95%={4.903, 12.129}]: 4.794789) [&95%={10.504, 16.211}]: 2.821953, (25Sc6803: 13.978230, ((19Ll7376: 5.917879, 28Sye700: 5.917879) [&95%={3.169, 9.263}]: 5.936836, (11Cb1060: 6.878431, 09Cb7202: 6.878431) [&95%={3.898, 10.444}]: 4.976285) [&95%={9.061, 14.767}]: 2.123515) [&95%={11.235, 16.595}]: 2.207865) [&95%={13.718, 18.823}]: 1.503114) [&95%={15.362, 20.354}]: 1.821014) [&95%={17.056, 22.142}]: 2.105131) [&95%={19.200, 24.235}]: 1.473859) [&95%={20.918, 24.829}]: 1.291659) [&95%={22.642, 26.033}]: 1.090419) [&95%={23.628, 27.211}]: 1.351829) [&95%={24.785, 28.658}]: 1.307116) [&95%={26.051, 29.760}]: 1.501264) [&95%={27.592, 31.215}]: 1.239807) [&95%={28.967, 32.288}]: 1.624263) [&95%={30.689, 33.604}]: 3.619503) [&95%={33.645, 38.043}]: 1.024316) [&95%={34.685, 38.451}]; END; ################################################