A barcode-based phylogenetic characterization of Phytophthora cactorum identifies two cosmopolitan lineages with distinct host affinities and the first report of Phytophthora pseudotsugae in California
Data files
Feb 25, 2022 version files 506.35 KB
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1a.3locus.169x2323.nex
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1a.cox1.155x1179.phy
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1acox2spacer.94x921.phy
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1acox2spacer.gaps.94x15.phy
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ITS.157x804.phy
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ITSgaps.157x17.phy
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Pcactorum21genomes.cox.fasta
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Pcactorum21genomes.ITS.fasta
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README_file.txt
Abstract
Methods
Sequences were derived by BLASTing a moving window of each locus against data in the sequence read archive corresponding to the listed BioSamples. Alignments are phylip files (.phy) and a nexus file (.nex) used as the input for IQTREE2.