Stressful conditions experienced during early development can have deleterious effects on offspring morphology, physiology and behaviour. However, few studies have examined how developmental stress influences an individual’s cognitive phenotype. Using a viviparous lizard, we show that the availability of food resources to a mother during gestation influences a key component of her offspring’s cognitive phenotype; their decision-making. Offspring from females who experienced low resource availability during gestation did better in an anti-predatory task that relied on spatial associations to guide their decisions, whereas offspring from females who experienced high resource availability during gestation did better in a foraging task that relied on colour associations to inform their decisions. This shows that the prenatal environment can influence decision-making in animals, a cognitive trait with functional implications later in life.