Landmark Data

TPS file containing landmark data

Chapter 1_Disparity Data.TPS

Phylogenetic Tree

A nexus file containing the phylogenetic tree used in the phylogenetic comparative methods.

Chapter 1_trees_final.nexus

Principal Component scores

Principal Component scores used to construct the morphospace and also used in the mvMORPH analysis.

Chapter 1_data_all PCs.csv

PhylogeneticEM data

Data used for PhylogeneticEM analysis

Chapter 1_PhylogeneticEM_data.csv

Conevol script

Script used to run Conevol analysis in R

Chapter 1_Conevol.txt

MVmorph script

Script used to perform MVmorph analysis in R

Chapter 1_MVmorph.txt

MVmorph_uncertainty script

Script used to perform MVmorph analysis while accounting for uncertainty in the trophic ecology

Chapter 1_MVmorph_uncertainty code.txt

PhylogeneticEM script

Script used to perform PhylogeneticEM analysis in R

Chapter 1_PhylogeneticEM.R

Surface script

Script used to perform SURFACE analysis in R

Chapter 1_Phylomorpospace and Surface.txt

Co-occurrence script

Calculate the probability of at least c of m shifts in morphological regime falling on the same branches of a phylogeny as e shifts in ecology

Co-occurrence.R

Data from: Ancient and contingent body shape diversification in a hyperdiverse fish radiation

Data files

Abstract

Landmark Data

Phylogenetic Tree

Principal Component scores

PhylogeneticEM data

Conevol script

MVmorph script

MVmorph_uncertainty script

PhylogeneticEM script

Surface script

Co-occurrence script

Data from: Ancient and contingent body shape diversification in a hyperdiverse fish radiation

Data files

Abstract

Usage notes

Landmark Data

Phylogenetic Tree

Principal Component scores

PhylogeneticEM data

Conevol script

MVmorph script

MVmorph_uncertainty script

PhylogeneticEM script

Surface script

Co-occurrence script

Works referencing this dataset