Enterolobium cyclocarpum database of abortions and seed weight in five populations of Mexico and Costa Rica
Data files
Jan 22, 2025 version files 302.03 KB
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Abort_and_seed_data_CRMX.xlsx
282.89 KB
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README.md
3.25 KB
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SR_fruit_data.xlsx
15.89 KB
Abstract
Premise of study
Analyses of the variation in the abortion rate and weight of seeds of tropical trees are scarce, despite their importance in modulating an important factor (seed production) and maintaining the functioning of tropical ecosystems. The different factors that affect the survival and development of seeds in tropical trees are largely unknown.
Methods
We studied the patterns of intrafruit ovule and seed loss and seed weight in fruits of the Guanacaste tree, Enterolobium cyclocarpum, in samples of trees from 5 populations in Mexico and Costa Rica. We analyzed the effects of developmental phase, fruit and maternal tree effects, and seed position within the fruit on the abortion rate and weight of seeds from mature and immature fruits. Naturally, pollinated flowers were studied to determine the degree of ovule fertilization within the ovaries.
Key results
Overdispersion of the abortion rate per fruit within trees and a higher frequency of abortions in the extreme positions of the fruit are common patterns in all populations. This pattern is observed from the beginning of fruit formation. Ovules in the stylar position do not present higher survival rates, despite their precedence in fertilization. A negative relationship was found between the number of abortion events and seed weight. The greatest sources of variation in abortion and seed weight were observed within trees.
Conclusions
Fruit-specific fertilization and developmental conditions seem to be the main factors driving the probability of abortion and the seed weight within Guanacaste fruits, causing high variability in seed survival and vigor within maternal tress. In contrast to the findings of other studies in legumes, the fertilization of ovules is not important for seed development. The correlation between the fruit abortion rate and seed weight may be related to the sink capacity of the fruit, which affects the development of all the seeds in the fruit.
README: Enterolobium cyclocarpum database of abortions and seed weight in five populations of Mexico and Costa Rica
https://doi.org/10.5061/dryad.0rxwdbs8v
There are two datasets
Abort and seed data_CRMX presents the contents of fruits of Guanacaste trees (Enterolobium cyclocarpum) sampled in five populations from Mexico and Costa Rica.
SR_fruit data presents information of individual fruits collected in the Santa Rosa population.
Description of the data and file structure
Abort and seed data_CRMX
Each line contains the data of individual seeds or abort in each fruit. Variables names and coding are:
Loc: population where the fruit was collected (SL = San Lucas (Mexico). VER = Veracruz (Mexico), CEC = Chamela-Cuixmala (Mexico), SR = Santa Rosa (Costa Rica), ROD = El Rodeo (Costa Rica)).
Tree: Tree code
Fruit_code: Name of the fruit (within each tree).
Seed: Seed number within fruit, where number 1 is the stylar position.
Weight: Weight of the seed in grams (empty space if it is an abortion).
Nloc: Number of locules of the fruit (seeds+aborts)
Pos: BStylar = stylar position, CBasal= pedicelar position, AInterme = a seed between the two extreme positions.
Abort: 1= abort, 0= viable seed
NSeedV: Number of viables seeds in the fruit
n/a (not available) in the Weight variable are empty locules or very small aborts
SR_fruit data
Tree: Tree code
Fruit: number of the fruit within the tree
Fruit_code: Name of the fruit (within each tree).
Nloc: number of locules (aborts + seeds) of each fruit.
Fruit_weight: weight of the fruit (without seeds) in grams.
Nloc: Number of locules of the fruit (seeds+aborts)
Abort: number of aborts in the fruit
NSeedV: number of viable seeds in the fruit
Abort_rate: the ratio Aborto/Nloc of the fruit
Fseed.ratio: the ratio Fruit_weight/NSeedV, grams of fruit per seed
n/a (not available) are empty cells
Code/Software
R script used in the data analysis of fixed and random effects on the abortion probabilty and seed weight:
library(lme4)
CRMX_sem_2023<-Abort_and_seed_data_CRMX
# analysis of the effect of fixed and random effects on the probability of abort
# these commands are repeated for each population in CRMX_sem_2023
m0<-glmer(Aborto~Nsem+Pos+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023,family=binomial,REML=FALSE)
m1<-glmer(Aborto~Pos+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023,family=binomial,REML=FALSE)
m2<-glmer(Aborto~Nsem+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023,family=binomial,REML=FALSE)
AIC(m0,m1,m2)
CRMX_sem_2023_noab<-CRMX_sem_2023[ which(CRMX_sem_2023$Aborto==0), ]
# analysis of the effect of fixed and random effects on seed weight
m0<-lmer(Peso~Nsem+Pos+NSemV+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023_noab,REML=FALSE)
m1<-lmer(Peso~Pos+NSemV+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023_noab,REML=FALSE)
m2<-lmer(Peso~Nsem+Pos+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023_noab,REML=FALSE)
m3<-lmer(Peso~Nsem+NSemV+(1|Loc/Arbol/CodFruto),data=CRMX_sem_2023_noab,REML=FALSE)
AIC(m0,m1,m2,m3)
# analysis of the effect of fruit weight on seed weigh in SR population
m0<-lmer(Peso~Nsem+Pos+NSemV+Peso.del.fruto+(1|Arbol/CodFruto),data=SR_fruit_data,REML=FALSE)
Methods
Five tree populations were sampled: three in Mexico (San Lucas (SL), Chamela-Cuixmala (CEC) and Veracruz (VER)) and two in Costa Rica, Central America (El Rodeo (ROD) and Santa Rosa (SR)). During 2021 we collected fruits from the ground under the tree canopy during the fruiting season (February–May) at the mentioned locations. An average of 10 trees were sampled at each location, with 10 fruits collected per tree. The fruits were taken to the laboratory, where they were opened, the seeds were individually weighed, and their positions in the fruit were recorded. The positions of the aborted and mature seeds were noted. An abortion event was recorded when the locule was empty or contained a small, deformed seed (wrinkled at the edges and very flat); most aborted seeds weighed less than 0.2 g, although some slightly heavier seeds were classified as abortions due to their shape. Normal fill seeds and abortion events were classified by their position in the fruit into three categories: stylar position (closest to the style position), basal (closest to the flower pedicel) or intermediate (any position between these two extreme positions). The total number of locules (empty and with abortions) and the total number of filled seeds per fruit were counted. Mature seeds were weighed using an 1 mg electronic precision balance (Ohaus).