Epigenetic mechanisms of partial dosage compensation in an avian, female heterogametic system
Cite this dataset
Catalan, Ana; Wolf, Jochen; Merondun, Justin; Knief, Ulrich (2021). Epigenetic mechanisms of partial dosage compensation in an avian, female heterogametic system [Dataset]. Dryad. https://doi.org/10.5061/dryad.15dv41nxz
Abstract
Methods
Tables FM_Liver_PG_20kb_all.txt and FM_Spleen_PG_20kb_all.txt summarized the ATAC-seq and expression data utilized in this project. Peaks were called using MACS2 and FPKM values were calculated with cuffnorm. The more detailed description of the data can be found in the methods section of the manuscript
The following tables describe the methylation data generated as described in the methods:
5mC_GW_FM.txt - methylation profile chromosome wide
5mC_PEAKS_FM.txt - methylation profile whithin called peaks
5mC_genes.20kb-5kbwin.FM.txt - methylation profile in expressed genes
data_HeterozygosityFMChrZ_v5.6.txt - heterozygosity data on the Z chromosome used to identify the PAR
D_Ko_C04_pooled_chr1.bg - bedgraph file of genome coverage on chr1 used for PAR identification
D_Ko_C04_pooled_chr2.bg - bedgraph file of genome coverage on chr1 used for PAR identification
D_Ko_C04_pooled_chrZ.bg - bedgraph file of genome coverage on chr1 used for PAR identification
D_Ko_C20_pooled_chr1.bg - bedgraph file of genome coverage on chr1 used for PAR identification
D_Ko_C20_pooled_chr2.bg - bedgraph file of genome coverage on chr1 used for PAR identification
D_Ko_C20_pooled_chrZ.bg - bedgraph file of genome coverage on chr1 used for PAR identification
Funding
European Research Council, Award: ERCStG-336536 FuncSpecGen
Knut and Alice Wallenberg Foundation