Additional morphometrical and ecological data collected during the 2018 expedition of the UMMZ in Nicaragua
Data files
Jan 10, 2024 version files 60.18 KB
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README.md
5.82 KB
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Supplemental_Data.xlsx
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Abstract
Nicaragua is a biodiverse country, but documented herpetological specimens are underrepresented when compared to other neighboring countries. In 2018 we conducted a collaborative expedition between the University of Michigan Museum of Zoology and Nicaraguan biologists. We visited three collection sites in the Pacific lowlands, Caribbean lowlands, and the Central Highlands, representing three major biogeographic regions. We collected specimens of 100 species from a total of 106 encountered. We provide accession numbers, morphological, genetic, and ecological information for these specimens. We recorded 23 new departmental and the first country record of Metlapilcoatlus indomitus (Smith & Ferrari-Castro, 2008), helping filling gaps in the known distribution of the species within Nicaragua and the Central American region. When available, we provide species range maps and comparative genetic tree including conspecific reference sequences from the region.
https://doi.org/10.5061/dryad.18931zd46
The data here was product of an expedition conducted under research permits by the national authority Ministerio de Ambiente y Recursos Naturales (MARENA) No. DGPNB-IC-025-2018. Sample and specimen exports No. DGPNB-IC-019-2018, DGPNB-IC-029-2018, DGPNB-IC-002-2019.
We did not collect species listed by the Convention on International Trade in Endangered Species (CITES) in Nicaragua, but we list the species encountered and provide photographs of uncollected individuals in the main manuscript. In the field, we collected a set of morphological, ecological, and behavioral metadata associated with each specimen. Specifically, we collected basic morphometric data (snout-vent length, mass, and tail length where applicable), GPS coordinates of the capture location (WGS84), and standardized ecological and behavioral observations made at the specimens’ point of capture when possible. We include all additional morphometrical data as supplemental material. Our ecological data include macrohabitat type (such as upland forest or riparian habitat), the substrate on which the animal was resting at the time of encounter (such as ground, leaf, trunk, or branch), perch height and diameter, and a description of the behavior of the animal at the time of encounter.
Additional information is included in the the species accounts for each species in the main manuscript.
Description of the data and file structure
The dataset is arranged in a table with the following fields:
Data Fields | Definition |
---|---|
UMMZ Number | Accession number for the specimen at the University of Michigan Museum of Zoology |
Field_number | Temporary field tag number assigned during field collection |
GenBank 16 Sequence | 16S rRNA barcode gene from our specimens on GenBank |
Date | Date of collection |
Time | Time of collection in 2400h format |
Taxon | Species name assigned using morphological and genetic information, see main manuscript for detailed description of the specimens |
Locality | Site of collection name |
SVL (mm) | Snout–vent length; measured from the tip of the snout to the most posterior opening of the cloacal slit (vent) |
Tail (mm) | Length from vent to tip of tail, if tail was incomplete it is noted in the Notes section |
Mass (g) | Mass of the animal measured at the time of collection in the field |
Ventral Scale Count | Only for snakes, number of ventral scales from chin to vent |
Sex | Female, Male, Undertermined |
Age | Adult, Juvenile, Undertermined |
Latitude | Latitute coordinates in decimal degrees using datum WGS84 |
Longitute | Longitude coordinates in decimal degrees using datum WGS84 |
Macro habitat | Terra Firme (upland); Riparian |
Activity | Activity of individual at time of collection (e.g., In motion, at rest) |
Substrate | Substrate of individual at time of collection (e.g., leaf litter, bare soil) |
Stratum | Stratum of individual at time of collection (e.g., ground layer, understory, canopy) |
Perch height (cm) | Perch height (cm) of individual at time of collection in centimeters from ground level |
Perch diameter (cm) | Diameter of the perch (when applicable) of individual at time of collection in centimeters |
Light environment | Light environment where individual was found at time of collection (e.g., direct sun, partial shade, shade) |
Land Aspect | Land Aspect of microsite where the individual was found at time of collection (e.g., flat, backslope, shoulder) |
Notes | Additional notes on behavior or comments from the field |
Sharing/Access information
Additional details and data from the collected individuals and the expedition are found in the main manuscript.
In the field, we collected a set of morphological, ecological, and behavioral metadata associated with each specimen. Specifically, we collected basic morphometric data (snout-vent length, mass, and tail length where applicable), GPS coordinates of the capture location (WGS84), and standardized ecological and behavioral observations made at the specimens’ point of capture when possible. We include all additional morphometrical data as supplemental material. Our ecological data include macrohabitat type (such as upland forest or riparian habitat), the substrate on which the animal was resting at the time of encounter (such as ground, leaf, trunk, or branch), perch height and diameter, and a description of the behavior of the animal at the time of encounter. We included this information in the remarks section of the species accounts.